Oncorhynchus mykiss (rainbow trout): 110520814
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Entry
110520814 CDS
T07259
Name
(RefSeq) integrin alpha-10
KO
K06586
integrin alpha 10
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04810
Regulation of actin cytoskeleton
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110520814
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110520814
09142 Cell motility
04820 Cytoskeleton in muscle cells
110520814
04810 Regulation of actin cytoskeleton
110520814
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
omy04515
]
110520814
Cell adhesion molecules [BR:
omy04515
]
Integrins
Integrin alpha subunits
110520814
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_1
Integrin_A_Ig_2
Integrin_A_Ig_3
FG-GAP_3
VWA_2
FG-GAP_2
ITGAX-like_Ig_3
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
110520814
NCBI-ProteinID:
XP_036823908
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Position
3:complement(8988084..9050862)
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AA seq
1170 aa
AA seq
DB search
MELHKYLLLLKFIVLLKGLCECFNIDVKRPRIYTGPEEALFGFSVLQHDNAGDKSMLVGA
PWDGPSNTRRGDVYKCIVGEERSSNCTKTNLGESTLQNVSRNLKNSHLGMTLSPDSPDGF
LACAPLWSQECGTSVFSTGICVSVSNDLEPRETIAPTAQRCATYMDIVIVLDGSNSIYPW
YEVQNFLSNILSKFHISPEQMQVGVLQYGEVAVHEWSLRDYQTTQEVVEAAKNISRQEGR
ETRTAYAIHMGCTEAFSPERGAREGATKVMIVVTDGESHDGEELPDALEECEKRNITRYA
IAVLGHYIRRQQDPETFISEIKYIASDPDDKYFFNVTDEAALNDIVDALGDRIFTLEGTL
GYNESSFKFEMSQIGFSTHVLDDGILFGMVGAYDWDGGVLKEGAEGRIMPTREAFESEFP
QELKNHAAYLGYTVSSVIVGDWRRLYVAGAPRFKHKGKVILFELSDNGDVNIAQALNGEQ
IGSYYGSEVCGLDVDQDGITDVLLVAAPMYLGPGNKEAGRVYIYSLSGEEVFVSNGTLKA
EDRFQDARFGYALASAPDLNHDGYTDLLVGAPLEDGHNGAIYVYHGQGIHIIHNYKQRIA
GSSLSPSLQYFGRSVSARLDLDGDGLLDLAVGAQGSAVLLSSRSIVQINMSLSFQPHSIN
VIQKTCQRGARESACLNATACFLALSRSPGTHSSSFDLSVVAMLDERKLTARALFDDSNQ
RQTQLGVRVHTGQTVCHNLTFHVFDTADYIRPISFSLRFKINDTESGPVLDEGWPTTFKR
SIAFFKDCGEDDVCVTDLVLQAHMDISGTRQQPYVIRSPRRRLAVEVQLQNRLENAYNTS
LTLHYSRNLHFSSLSIREDTQLKIECTSLSSNSHSCNVSYPVFRSHSKVNFMLEFEFSCT
SLLSKVQMKLTVASDSVEREATLGDNSVQLQTVVQYEPDLFITSDSNLNRYEVHPTRTIS
EAIGPEFYTHFRLQNLGCYSVSNLELRLSLPSVAAGDRIFMAVTEVFSYNVTGVNCSVDS
DVSQQKDRQRDVRPLHPEDMQQTDLLNCSRSWCVEVVCEVQQLHRGQTALIRVSRRVHDN
FFRQAKFKVVRIVSAYHLAAQESNLVTLGSGAIWRETVLEVLKGRAIPISLWILIGSIIG
GLLLLALIIFAMWKLGFFTRKQIKDEELED
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcacaaatacctgctactcctcaagttcattgttctcctcaaagggttgtgt
gagtgtttcaacatcgatgttaagcggcctcgtatctacaccggtccagaggaggcccta
tttggtttctctgtgctacagcatgacaatgcgggggacaaatcgatgctggttggtgct
ccttgggatggaccttccaataccaggagaggagacgtgtacaaatgcatcgtgggagag
gagaggagctccaactgcaccaaaaccaacctaggtgagagcacgttacagaatgtatct
agaaacctgaagaactctcatctaggaatgaccctcagtccagactcacctgatggattc
ctggcgtgtgcgcccctgtggtctcaggagtgtggtacctcagtcttcagtacggggatc
tgtgtttctgtcagcaacgacctggaacctagagagaccatcgcccctacagcacagaga
tgtgcaacatacatggacatagtgatcgttctggatggctccaatagtatctatccctgg
tatgaagtccagaacttcctcagtaacatcctcagcaagttccatatcagcccagaacag
atgcaggtgggggttttgcagtacggtgaggttgcggtccatgagtggtcactgagagac
taccagacaacacaggaggtggttgaagcggctaagaacatcagccgacaggaggggcgg
gagacacgcacagcatacgccatccacatgggctgtacggaggcattcagccctgagcgg
ggggcgagggagggtgccaccaaagtcatgatcgtggtgacggacggagagtcacatgat
ggggaggagctaccggatgctctggaggagtgtgagaagagaaacatcaccagatatgcc
atcgctgtattgggtcactacatccgcaggcagcaggacccagagacgtttatcagtgag
atcaagtacattgccagcgaccctgacgacaaatacttcttcaacgtgactgacgaggcg
gcactcaacgacatcgtagatgcactaggagaccgcatcttcactctagaggggacgctg
gggtacaacgagagctccttcaagtttgagatgtcccagattggcttctccacacacgtt
ctcgatgacggcatcctgtttgggatggtgggggcgtatgactgggacggaggggtgctg
aaggagggcgctgagggccgcatcatgcccaccagagaggcctttgagtcagagttcccc
caggagctcaagaaccatgctgcctatctgggctacacagtgtcgtcagtgatagtggga
gactggaggaggctgtatgtggctggagctcccaggttcaaacacaaaggaaaggtcatt
ctgtttgaactgagcgacaatggagatgtcaacattgcacaggccctcaatggagaacag
attgggtcgtactatggcagtgaggtgtgtgggttggacgtggaccaggacggcattact
gatgttctgctggtggcagcacccatgtacctgggccctggcaacaaggaggcaggcaga
gtctacatctactccctcagtggggaggaggtgtttgtgtctaacggtactctgaaggca
gaggataggttccaggatgctaggtttggctacgccctggcctccgccccagacctcaac
catgacgggtacactgacctgctggtgggggcacccctagaggacggacacaatggggcc
atatacgtctaccacggccagggcatacacatcatccacaactacaaacagcgtatcgca
gggtcgtccctgtccccctctctgcagtattttgggcgcagtgtgagtgccagattagac
ctggatggagatggtctgttagacctggctgtgggggcccagggcagtgctgtactactc
agttctcgtagtatagtccagatcaacatgagtctgtccttccagccccactccatcaac
gtcatccagaagacatgtcagagaggagcgagggagtctgcctgtctcaacgctacagcc
tgcttcctggctctgtcccgttcccctggaactcacagcagcagcttcgatctgtcggtg
gtggccatgttggatgagcgaaagttgacagcgagggcgttgtttgacgacagcaaccag
agacagacacagctgggggtcagagttcacacaggacagaccgtctgccacaacctgacc
ttccatgtgtttgacacagcagactacatccgtccaatcagtttctccctgcgctttaag
atcaacgacacagagagtggcccagtgctggacgaaggctggcccaccaccttcaagaga
tcgattgccttcttcaaagactgtggtgaggatgatgtgtgtgtcactgatctggtgctg
caggctcatatggacatctctgggacaagacagcagccctatgtgatccgtagccctcgc
agacgtctggctgtagaagtccagctgcagaacagactggagaacgcctacaacaccagc
ctgacactgcactactcacgcaacctccacttctctagtctcagtatacgggaggatacc
cagttgaaaattgagtgtacatctctcagttccaacagtcattcctgtaatgtcagctat
cctgtgttccgctcccactccaaggtgaacttcatgttagagtttgagttcagctgtacg
tctctgctcagtaaagtccagatgaaactcacagttgccagtgacagtgtggagagagag
gctacgctgggagacaacagtgttcagctccagactgtggttcagtacgaacctgacctc
ttcatcaccagtgactccaatctgaaccgttatgaggtccacccaaccagaaccatatca
gaggcaataggaccagagttctacacacacttcaggctgcagaacctgggctgttacagt
gtgagtaacctggagttgaggctgagcctgccctctgtagcagctggagacagaatcttc
atggctgttactgaggtcttctcttacaacgtgacaggggtgaactgcagtgtagacagt
gacgtgtcccagcagaaggacagacagagagatgtacgaccactacatcctgaagacatg
caacagactgacctactgaactgcagcaggtcgtggtgtgtggaggtggtgtgtgaggta
cagcagctgcatcgaggacagaccgctctcatacgagtcagccgcagggtccacgacaac
ttcttcagacaggctaagtttaaggtggtgaggatagtgagtgcctatcatctggctgct
caggaatctaacctggtcactctggggagtggcgccatctggagggagacggtgttggag
gtactaaaggggcgggccatccctatttctctctggattctgataggtagcatcattgga
gggcttctgctattggccctcatcatcttcgcaatgtggaagctggggttcttcactcgt
aaacagataaaggacgaggaactcgaggactga
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