Oncorhynchus mykiss (rainbow trout): 110520931
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Entry
110520931 CDS
T07259
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110520931
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
omy03310
]
110520931
Transcription factors [BR:
omy03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
110520931
Nuclear receptors [BR:
omy03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
110520931
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
110520931
NCBI-ProteinID:
XP_021454032
Ensembl:
ENSOMYG00000040506
LinkDB
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Position
1:complement(30713838..30981725)
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AA seq
526 aa
AA seq
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MESPPDPASDPGNSASEPVTPARETPVNLETLRKADHPAPVRRQTCSSTNRGGLTNKQGI
SVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLI
DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQAQRDHQQQPG
EAEPLTPTYGLSANGLTELHDDLSGYMDSHTPDGSKPDSAVSSFYLDIQPSPDQSGLDIN
GIKPEPICDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQ
MTWQAFLQEEMESYQTKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK
AGSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSE
DEIALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTL
RALCSRHTEKLTAFKAIYPDIVRSHFPPLYKELFGSDFEQSMPIDG
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcaagcgacccgggcaacagcgcctccgagccggttacc
ccggccagggaaaccccggtaaacctggagacgctccgaaaagcggaccatccagcccct
gttcgaaggcagacctgttcaagcaccaacagaggtggactcacgaacaagcaaggtatt
tcagtaacaaagaagacacatacctctcaaatcgaaataattccctgcaagatctgtgga
gacaaatcatcaggcatccattacggtgtgataacatgcgaaggctgtaagggcttcttc
aggaggagtcaacagagcaatgcggcctactcatgcccccgtcagaagaactgcctgatc
gaccgcaccagccgcaaccgctgccagcactgccggctgcagaagtgtctggcagtgggc
atgtcacgggacgcggtgaagtttgggcgcatgtcgaagaagcagcgggacagcctgtat
gcggaggtgcagaaacaccggctgcagcaggcgcagcgtgaccaccagcagcagcccggc
gaggccgagccactcacacccacctacggcctctcggccaatggcctcacagagctccac
gatgacctcagtggctacatggacagccacacccccgacggcagcaagcccgactcagca
gtcagcagcttctacctggacatccagccctcccctgaccagtccggcctggacatcaat
ggcatcaagcctgagcccatctgcgacttcgcccctggctcaggcttcttcccctactgc
tcctttaccaacggagagacatcccccaccgtgtccatggctgagctagagcacctggcc
cagaacatctccaagtcccacatggagacgtgtcagtacctgagagaggagctgcagcag
atgacctggcaggccttcctgcaggaggagatggagagctaccagaccaagccccgggag
gtcatgtggcagctgtgtgctatcaaaatcactgaggccatccagtacgtggtggagttt
gccaagcgcatcgacggcttcatggagctgtgtcagaacgatcagatagtgcttctgaaa
gcaggctctttggaggttgtgtttgtcagaatgtgccgtgccttcgactctcaaaacaac
acagtctatttcgatggaaagtatgctgggcccgatgtgtttaagtcattaggctgtgac
gatttgatcagctccgtcttcgagtttgggaagaacttgtgttctatgcacctgtctgag
gatgagatcgccctgttctccgcgttcgtgttgatgtctgcagaccggtcctggctccag
gagaaggtaaaggtggagaaactccagcagaagatccagctggcactgcagcatgtcctg
cagaagaaccacagagaggatggcatactcaccaagttgatatgcaaagtgtcaacactg
cgggcgctgtgcagcaggcatacagagaagctgacggctttcaaagcaatatacccagac
attgtgcgttcccactttcccccgttatacaaggagctcttcggatcggactttgagcag
tccatgcccattgacgggtag
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