Oncorhynchus mykiss (rainbow trout): 110521087
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Entry
110521087 CDS
T07259
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110521087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110521087
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110521087
U7-dependent histone pre-mRNA processing factors
110521087
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Beta_lactamase3
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
110521087
NCBI-ProteinID:
XP_036832052
Ensembl:
ENSOMYG00000009572
LinkDB
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Position
4:34902850..34916426
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AA seq
874 aa
AA seq
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MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKERMKKEAAKKLEQEKEVDVDSS
DESDMEDDLELPAVVKTKHHDLMMKGDGVRKGSFFKQAKKSYPMFPTHEERVKWDEYGEI
IRPEDFLVPELQATEEEKNKLESGMANGDEPMDQDSSSKVPTKCTSTTENLEIKARVTYI
DYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFTKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLDMRVVKVDTGVLPEEGMVKGEKGT
GEEVVEDSELAMDVTPADDATTDHSVVAQQRAMKTLFGEDVRELSEESDVIPTLEPLPAH
EIPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRVSLWEECWCVTTWW
PSAGRRRGASAWKDACVMTIIRSVSCCISSMLWCRREEQHAAEMVSVMTVSHRRDGGERG
LLPRGPQGFRYSPHTGYLSSPREPFQLFEFQLLC
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctattatcaaactgactgctgtgtcaggggtgcaggaggagtctgccctctgc
tacctgctgcaggtggatgagttccgcttcctcctggactgtggctgggatgagagcttc
tccatggacatcattgattccatgaaaaggtatgtccaccaggttgatgcggtgctcctc
tcccatcctgatcccctgcacctgggggccctgccctatgctgtgggcaagctgggccta
aattgccccatatatgccaccatccccgtctacaagatgggtcagatgttcatgtatgac
ctgtatcagtcgcgcaacaacactgaggacttcaacctgttcaccctggatgatgtggac
tgcgctttcgacaaaatccagcagctgaagtactcccagattgtcaatctgaaagggaaa
ggacatggtctgtccatcactccacttcctgctggtcacatgatcggagggaccatctgg
aagattgtgaaggatggggaggaggagattgtttacgcggtggacttcaaccacaaaaga
gagatccacctgaatgggtgtacgttggagtcggtgagccgtccctctcttctcatcaca
gactcgttcaacgctacatacgtacagccgcgtcgcaagcaaagggacgagcagctcctt
accaatgtaatggagaccctacgcggcgacggcaacgtgctgatcgcggtggatacggca
ggccgtgtactggagctggctcagctgctggaccagatctggaggacaaaggacgcaggg
ctgggggtctactctctggccctgctcaacaacgtcagctacaacgtggtggagttctcc
aagtctcaggtggagtggatgagtgacaagctgatgcgctgcttcgaagacaagcgcaac
aaccccttccagttccgtcacctgtccctgtgccacagcctggccgacctggctcgcgtg
cccagccccaaggtggtgctctgcagtcagcccgacctggagtctggcttctcccgcgag
ctcttcatccaatggtgtcaggacgccaagaactctgtgatccttacctaccgtaccacg
cccggaaccctgggccgctacctcatcgacaaccccggggagaagatgctggacctggag
attaggaaacgggtgaagctggaaggcagagagctggaagaatacctagaaaaagagaga
atgaagaaggaagctgccaaaaaacttgaacaagaaaaagaggtggacgtggactcgagt
gatgagagcgacatggaggatgacctggagctgccggcggtggtgaaaaccaaacaccac
gatctcatgatgaagggagacggcgtccgcaagggcagcttcttcaaacaggccaagaag
tcttaccccatgttccccacccacgaggagagggtcaaatgggatgagtacggagagatc
atcagaccggaggacttcctggtaccagagctccaggccactgaggaggagaagaacaag
ctggagtcgggcatggccaacggggacgaacccatggaccaggactcctcatccaaagta
cccaccaagtgtacctccactacggagaacctagagatcaaagccagggtgacttacatc
gactacgagggccgctcggacggcgactccatcaagaagatcattaaccaaatgaaaccg
cggcagctggtgatcgtgcacggcccccccgaggccagcctggacctggccgagtcctgc
aaggccttcaccaaggacatcaaggtctacacgcccaagctgcaggagactgtggacgcc
accagtgagacacacatttaccaggtgcggttgaaagactcactggtgagctcgctgcag
ttctgccgcgccaaggacacagagctggcgtggatcgatggcgtactggacatgcgcgtg
gtcaaggtggacacaggcgtgctgcctgaggagggcatggtgaaaggcgagaagggaact
ggcgaggaggttgtggaagacagtgagctggccatggacgtgacccctgctgacgatgcc
accacggaccatagcgtggtggcgcagcagcgcgccatgaagacgttgtttggcgaggat
gtgcgcgagctgtcggaggagagtgatgtcatccctaccctggagcctctgcctgcccac
gagatcccaggccaccagtcagtgtttatcaacgagccgcggctgtccgacttcaagcag
gtgctgctgagggaaggcatccaggctgagtttgtgggaggagtgctggtgtgcaacaac
atggtggccgtccgcagggtgagtttgtgggaggagtgctggtgtgtaacaacatggtgg
ccgtccgcaggacggaggcggggcgcatcggcctggaaggatgcctgtgtgatgactatt
ataagatccgtgagctgctgtatcagcagtatgctgtggtgtaggagagaggagcaacat
gcagcagagatggtgtcagtcatgacagtatcacacagacgggatggaggggagcgagga
ctattacccagaggaccacagggttttaggtattctccacacacaggctacctgagctcc
cctcgggagcctttccagctgtttgaattccaactgctgtgttga
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