Oncorhynchus mykiss (rainbow trout): 110521546
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Entry
110521546 CDS
T07259
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110521546
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110521546
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
110521546
NCBI-ProteinID:
XP_021454826
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Position
30:21443912..21446237
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AA seq
315 aa
AA seq
DB search
MYNMMETELKPTAPQTNSGVTGNSNASGNNLKNSPDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKD
KYTLPGGLLATGGNAMGAGVGVGGGLGGGVNQRMDSYAHMNGWTNGGYGMMQEQLGYGQH
PGLNAHNTAQMQQMHRYDMSALQYNSMTNSQTYMNGSPTYSMSYSQQSTPGMTLGSMGSV
VKSESSCSPPIVTSSSHSRGAPCQTGDLRDMISMYLPGAEVPEQTAQSRLHMSQHYQSAP
VPGTTINGTLPLSHM
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaaactgaactgaaaccaaccgcaccccagacaaattctggggtt
acggggaattcaaatgcatctggaaacaacctgaaaaacagtccggaccgagtcaagaga
cccatgaatgccttcatggtttggtcgaggggacaacgaagaaagatggcacaggaaaac
cccaaaatgcacaattcggaaataagcaaaagacttggggccgagtggaagcttctatcc
gagagcgaaaagcgacctttcattgacgaagcgaagcgtctccgggctctccacatgaag
gaacatccggattacaaatacagaccccggaggaaaaccaagaccctgatgaagaaggac
aagtatactctgccaggtggacttcttgcgacaggcggcaatgccatgggcgctggagtg
ggtgtagggggaggcttgggcggtggggttaatcaaaggatggacagttacgcacatatg
aacggctggaccaatggaggttatggcatgatgcaggagcagcttggttatgggcagcac
cctggtttaaacgctcacaacaccgcacagatgcagcaaatgcaccgctatgacatgagc
gcacttcagtacaactccatgacaaactcccagacctacatgaacggatcacccacgtat
agcatgtcatactcacagcagagcactcctggaatgactctgggctccatgggttcggtg
gtcaagtcagagtccagttgcagtccccccatagtcacgtcttcgtctcactcaaggggt
gctccgtgtcagactggagacctacgggacatgatcagtatgtatttaccgggtgctgag
gtgccggagcaaactgcccaaagcagactccatatgtcccaacattaccagagcgcacct
gtaccaggcacgacgattaatggcacactcccactatcacatatgtaa
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