Oncorhynchus mykiss (rainbow trout): 110521668
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Entry
110521668 CDS
T07259
Symbol
fip1l1a
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110521668 (fip1l1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110521668 (fip1l1a)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110521668 (fip1l1a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
110521668
NCBI-ProteinID:
XP_021455077
Ensembl:
ENSOMYG00000003094
LinkDB
All DBs
Position
30:28260830..28307538
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AA seq
514 aa
AA seq
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MSAEMDKATDASGGDEEEWLYGDESEEKAEEEAPNSAKAQPTAEEVHENGVVKQDTGQED
EESDSDSEDDDDVCVTIGDIKTGGSSQPFNAFGSTPVNLNIKAAGRTHASVGPKAKGVDL
DALGSVNGIPVLEVDIESFEEKPWRKPGSDLSDYFNYGFNEDTWKTYCEKQRRLRMGYEG
MSHASATKIMVHQGRSAHGDRDGALSCFRSDYSSPSNHYNSGSSSRKPSGTIDVIGGQTG
TISRVEGRRRHNIEGNNIQVLSEPPSDAEPTPTKMPPFFPPNIPPPPFPPPPHNVSSAPP
LIPPPRIPINVPPPGYPPGAPPPSLIPTLDSGRSGGYDGRSAPPYPPFPPGVYPPPPPGS
AAASWAGVFDSAKAWEYYAQRDNERERHKERDRTRERGHEKEREREREHNPSSQVVNSEE
DRHRHRDYGERGYDRHHHERSSREKEERHREKRHRDKEEGRHKSSSSSSRRRHESEEGDS
HRRHKHKKVKRSREDKEPSQELSADQENQSEPTE
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaaatggacaaagcaactgatgcaagcgggggcgatgaagaagaatggtta
tatggagatgagagtgaggagaaggcagaggaagaggcacctaatagtgcaaaggcccag
ccgactgctgaagaggtccatgagaatggagtagtgaagcaggatacaggccaggaagat
gaagaaagtgacagtgacagtgaggatgatgatgacgtgtgtgtaaccattggcgatata
aagaccggaggctcatctcagcctttcaatgcttttggatccacaccagttaatctcaac
attaaggctgcagggagaacacatgcgtcagttggccccaaagccaaaggagtggacctg
gatgcactgggcagtgttaacggaatccctgtgttggaggtcgacattgagtcttttgaa
gaaaagccgtggagaaagcctggttcggacctctcggactactttaactatggctttaac
gaggacacctggaagacctactgtgagaaacagaggagactacgcatggggtatgagggc
atgagccatgcttcagccactaaaatcatggtccaccagggacgttcagcccatggtgat
agggatggggccctttcctgctttaggtctgactattcctcccccagcaaccactacaat
tcaggctcctccagtagaaagccgagcggcaccattgatgttattgggggacaaactggt
accatcagccgggtagagggacgaagacgtcacaatatagaaggaaataacatccaggtg
ctttctgagcccccctctgatgctgagcctactcccactaagatgccccccttttttcct
cccaacatccccccgcctcctttcccgcctccaccccacaatgtcagctccgcccctcca
ctcattcctccaccacggatccccatcaatgttcctccacctggctaccctcctggcgca
ccacctccttctctgattcccaccttagacagtggacgctctggaggctatgatggtcgc
tcagctccaccgtacccccccttccctccaggtgtgtaccctcctcctcccccgggtagc
gcagcagcctcctgggccggggtattcgacagtgccaaggcctgggagtactacgcgcag
cgggacaacgagcgagagcgccacaaggaaagagaccgaaccagagaacgtggacacgag
aaagaaagagaaagggagagagagcacaacccttcctcccaggtcgtcaacagtgaggag
gatcggcaccggcacagggactatggggagagaggatatgaccgccaccaccacgagaga
tccagcagagagaaagaagagagacaccgagagaagagacacagagacaaagaggagggg
agacacaagtcctcaagcagtagcagcaggaggagacatgagagtgaggagggggacagt
catcgaagacacaaacacaagaaggtcaagaggagcagagaggacaaggagcccagccag
gaactctctgctgaccaggagaaccaatcagagcccacagagtga
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