Oncorhynchus mykiss (rainbow trout): 110522038
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Entry
110522038 CDS
T07259
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit A
KO
K15212
TATA box-binding protein-associated factor RNA polymerase I subunit A
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110522038
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
110522038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1_subA
Motif
Other DBs
NCBI-GeneID:
110522038
NCBI-ProteinID:
XP_021455779
LinkDB
All DBs
Position
4:complement(9200647..9206289)
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AA seq
490 aa
AA seq
DB search
MVFGANSHFLLNNLHQIYANENRSNLKRWVMDDLESELRVPGEERGENESSDDDESINIK
RIKKPNLPLAPPLFKETPRETGFHKTTRNCLQHIREVLLHHRWQDAAEYMASYSQTLEDT
TANMPQLYAEIIWRIGTEILHHHPNSTLEDYNSFYERVKHSGVKHYLKVCLEHSFHLLVN
GQFEDAKLQLSIAESWRYGKQSAGQSQRIRLIQAYSGFLDYFIWCDKKATASSTDEYDAA
VNQEMHSYFRQSSVNLKEIMKLPGVWDPFVLSYIDMLEFYNDHEGAVKVLNDYAYDDSFP
PNPNAHVYLYRYMKKQNHPLKKLLKVLKILHTLVPSHELMPEYCSLLVQSENEGDLQKAL
GVVLDLLDYSSWRSNLDVWNHLMNIIKRLRMKKQWLKIFAEEMGYRKDWWLAIHFSTFQA
RKDSAENRELLEVKSFVVGAFCPHYASMYSGVGKAARKGVTSEARKAKRNPKPLKNIRRL
RREKGQQSQD
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttggcgcaaattcacactttttgctaaacaacctacatcaaatatatgctaac
gaaaataggtcgaacttaaaacgttgggtcatggatgatctggagtcagaactgagggtg
cccggtgaagaacggggcgaaaatgagtcttcagatgacgatgaatcaatcaacataaaa
cgaatcaagaagccaaaccttcccctggcgcctcctttatttaaagagacaccccgtgag
actggctttcacaagaccacaaggaactgcctccagcacatcagggaggtcttgctgcac
catagatggcaggatgccgcagagtacatggccagttactcacagacactggaggatacc
accgcaaacatgccacaactctacgctgagatcatttggaggataggcacagagatacta
caccaccatcccaactcgacgctggaagactacaacagtttctatgagcgagtgaaacac
tcaggagtaaagcattacctgaaggtctgtctggagcactcgttccatctcctggtcaat
gggcagtttgaggatgccaagcttcagctgtccatcgctgagagctggaggtatggcaag
cagtcagccggtcagtcccagaggattaggctgatccaggcctatagtggcttcctggat
tacttcatctggtgtgacaagaaagccactgcatccagcacagatgagtatgatgcagct
gtcaaccaagaaatgcatagctacttccgacaatcttctgtgaacctgaaggagatcatg
aagcttcctggcgtctgggatccttttgttctgagttacattgatatgctggaattctac
aacgatcacgagggagctgtgaaggttctaaatgactatgcctatgacgacagtttccca
cccaaccccaatgcccatgtctacctataccggtacatgaagaaacagaaccacccactg
aagaaacttctcaaagtgctgaagatcctgcatacattggtcccaagtcatgagttgatg
ccggaatactgttctcttctggtacagtcggagaatgagggtgatcttcagaaggctcta
ggtgtggttctggatctcctggactactccagttggaggagcaacttggatgtctggaac
catttgatgaacatcatcaagagactgaggatgaaaaaacaatggctgaagatttttgca
gaggagatggggtacagaaaggactggtggctagcaatacacttctcaacattccaggcc
aggaaagattcggcagagaatagagagctactggaagtgaagagctttgttgttggagcc
ttttgtcctcactatgcctccatgtactccggtgttggtaaggcagcccgaaaaggagta
acttctgaggctcgaaaggctaagaggaatcctaaaccgctaaaaaatataagaaggctc
aggagagaaaagggacagcaaagccaagactga
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