Oncorhynchus mykiss (rainbow trout): 110522063
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Entry
110522063 CDS
T07259
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110522063 (taf1b)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
110522063 (taf1b)
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
110522063
NCBI-ProteinID:
XP_036831503
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Position
4:10734546..10747966
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AA seq
600 aa
AA seq
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MDEEQTGGYSDICGQCGEVNWGVSDEGRFYCRSCHNVIERTKEVVDTNTFMVGTSRVSSI
SKGTRRKKLEQGREWMVCEGFQFILKHQAEALLAMGVCPQFKDDVLCQFWRMYLQKSRQA
YTKNPVHDGKFRLRSQGSGESDSAPESSVMSDSMMSASETDGDGDWASGGGSVSGHTSDG
ASSVCSGSIDAVSYLTPRQRRSQGLMSMPKTLALCHLALLWAREAITLADLLRFVNEGHI
PYVNAYEDFPEEMKLYGRDSLIFRVESIPSYSHLHKEAQALAVFLELPLFPPITLDCLLH
PSLLTLRYLTEANLPDELHDWVCRIMEKAGMESSVTFEPMRSRSPLPHYDVQAAALIIIA
MKLLFKLDDHTEWDLSNDASDKNKENPDGNSFNLRWWYRTMQTALTTAARRQQDNIARKH
WKPQKPLYTSKKDKSVVLKRRRIAEQLQLSFQKLSSSPVAPPSTPPSSFCFRWGEEGEEV
WDGPSLHHLTLDSSVRQRGASLQPANPEYWHPALRACKPRFCKSHYAEVEVTLPRMYVWL
LDLFSFLLGVKPGCVYEEVLKVERRFLGSSKSQPRARATPRKTQPKKLHKRKQTSKTCSR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaacaaacggggggctacagcgatatctgtggccagtgtggagaggtgaac
tggggggtgtcggatgagggtcggttctactgcaggtcctgtcataatgtcatcgagaga
acaaaagaagtggtggatacaaacacttttatggttggtaccagcagagtgtcctccatc
tccaagggaaccagaaggaaaaaactagagcaagggcgagagtggatggtgtgtgagggc
tttcagttcatcctaaagcaccaggctgaggctcttctggccatgggagtctgcccacag
ttcaaggatgacgtgctgtgtcagttttggagaatgtacctacagaagagccgacaggcc
tacaccaagaatcctgtgcatgatgggaaatttagactgcgttctcagggctctggggag
tcagacagtgctccggagtcgtcagtgatgagtgactctatgatgtctgcctctgagaca
gacggggatggagattgggcaagtggaggaggctctgtctcaggtcacaccagtgacgga
gcctcctcggtgtgttccggttctattgatgccgtctcgtacctgaccccgcgccagagg
aggagccaggggttgatgagcatgcccaagaccctggcactgtgccacctggccctgctg
tgggccagagaggccatcacactggcagacctgctcaggtttgtgaatgagggccacatc
ccctatgtgaacgcctacgaggacttcccagaggagatgaagctctacggccgagactca
ctcatcttcagagtggagtctatcccctcttacagccacctgcacaaggaggcccaggcc
ctggctgtgttcctggagcttcccctgttcccccccatcaccctggactgcctgctgcac
ccctccctgctcactctccgctacctcaccgaagccaacctgcccgatgagctgcatgac
tgggtgtgcaggatcatggagaaggctggtatggagtcgtccgtgacctttgaacccatg
aggtccagatcccctctcccacactacgatgtccaggctgctgccctgatcatcatcgcc
atgaagctgctcttcaaactggacgaccacactgagtgggatttatccaatgatgcaagt
gacaagaacaaggagaacccagatgggaacagctttaacctgaggtggtggtacaggaca
atgcagactgccctgaccacagctgcacggagacagcaggacaatatagccagaaagcat
tggaagccccagaaacctctatatacctcgaagaaagacaagtcggtcgttctcaaaagg
agacgtattgcagagcagctccagttgagtttccagaaactgtctagttcccctgtggcc
ccaccatccacccctccctccagcttctgtttccgctggggtgaggagggggaggaggtc
tgggacgggcccagcctgcaccacctgaccctggacagcagcgtccggcagagaggggca
agcctccagcccgccaacccagaatactggcacccagccctgagggcctgcaagcccagg
ttttgtaagagccactatgcggaggtagaggtcactctccccaggatgtacgtgtggctg
ttggacctcttctccttcctcctgggggttaaacctggctgtgtatacgaagaggtactg
aaggtggagaggcgcttcctcgggagcagcaagtcccagcccagggcaagagctacgccc
agaaagacacagcccaaaaaactacacaaacgcaaacaaaccagtaaaacatgttctcgg
tga
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