Oncorhynchus mykiss (rainbow trout): 110522406
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Entry
110522406 CDS
T07259
Symbol
si:dkey-119f1.1
Name
(RefSeq) structural maintenance of chromosomes protein 6 isoform X1
KO
K22804
structural maintenance of chromosomes protein 6
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
omy03400
]
110522406 (si:dkey-119f1.1)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
110522406 (si:dkey-119f1.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
ACBP4_C
AAA_13
Cast
Crescentin
TMF_TATA_bd
OVT1
AAA_29
AAA_21
GalA_N
Motif
Other DBs
NCBI-GeneID:
110522406
NCBI-ProteinID:
XP_021456455
Ensembl:
ENSOMYG00000021815
LinkDB
All DBs
Position
4:complement(24034153..24052516)
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AA seq
1091 aa
AA seq
DB search
MSKRKSNSIGESPHKRVRSTEVHDEDNEVGPSQPPVPLGSHTTVGEVGIVESISLKNFMC
HSLLGPFAFGSNVNFVVGNNGSGKSAVLTALMVGLGGKATTTNRGSSLKGFVKEGESSAD
VSITLRNKGRDAYKPEVFGQAIIVDLKITREGMRTYKLKSKAGHLVSAKKDELLAILDHF
NIQVDNPVSMLTQEMSKHFLHSKGEGDKYRFFMKATQLEQMKEDYTYIITTKNVTLDTVE
KHEECLEGLKRKYLEKEDRVKSLASLDDMHSKLEELKNQMAWALVSEMEKEVKPMREKLQ
SEERSTIKYDQKVDEWKAKVVEAEKKYKGIREQLEAITVRVQQLEPQSAELKNEAQSRSK
AFNTAQASVHRFKTNLRDLEKDKDQLSRRINELKLSISQTSGAETQVRVERMEKLQTDLD
TLNFQDSTLGQQMEQFQQAVSRAKDELEKMMREEEDLKRSMEAIRRKLQTMEGSRSDRLR
RFGEKMPALLAAIEDADRKGQFRKKPVGPLGYCIRLKDHEQALAVEKCLGSLMVAFTCDN
HEDEKLLQGLMRGYYQGGRRPQIITCQFFNRVHDTSRRAVNHPDYPSVLQSLEIEDPVVA
NCLIDQRGIETILLIKSPAEARRVMQGRQPPRNCYQAFTKEGDQCYNNRYYSNDQRRCDY
LSRDVEEEIRQLQEEMRNKEAHLDRFSQQKQRVEEDIRNNNSLLKRAYDDRKRAKDKFRR
LQQEISDLQNVEEPQSEDLKPLEEELEEINNKISAGRAESEEARRKMAQLKASWEEVEQR
YRQHKDSISTVAEEAEPIKEELSKSDQDVEKSKHHKKHYEDKRKVHINTIQALKASLDLK
EQELTASVVKATEICPERSEVRRTARSLDSEISRLKLKISTQQDQQGDREEVIRQYQEAL
ENYSNINQQVKCLKRFIQVLCKIMDDRHRVYTELRRFLSVRCKMYFDSMLSQRGYIGKMM
FEHKNETLSISVQPGVGDKAALSDMRSLSGGERSFSTVCFVLSLWAIAEAPFRALDEFDV
YMDMVNRRISMDMMLKIASSQRYRQFIFLTPQSMSSLPVNNLIRILRLKDPDRGQTALPF
GQRNEEEEEEE
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagaggaagagcaactcaattggagagagcccacacaagagagtcagatccaca
gaggttcatgatgaagataatgaagtgggtcccagccaaccccctgtgccactaggatcg
catacgactgttggagaggtgggcatagtggagagcatctccctgaagaactttatgtgc
cactctctgctggggccatttgcgtttgggtccaatgtcaactttgtcgtcggcaacaat
ggaagtggaaagagtgctgtcctcacagctcttatggtgggcctgggagggaaagctaca
accacaaacagagggtcctccctgaagggatttgtgaaggaaggagagagttcagctgat
gtctccataacactgcgtaacaagggcagggatgcctacaagccagaagtgttcggccag
gctatcatagtagacctcaagataacccgtgagggcatgaggacctacaagctcaagagc
aaagcaggtcatcttgtgtctgcgaagaaggatgaacttttggccattctggatcacttt
aacatccaggtggataaccctgtatctatgctaactcaagagatgagcaagcactttctg
cactccaaaggagaaggggataagtacagattctttatgaaagccacacagcttgagcag
atgaaagaggattacacctatatcataacgactaaaaatgtcactctagacactgtggag
aaacacgaggagtgtctggaggggttaaagaggaagtacctggagaaagaggaccgggtc
aaaagcctggcctcgctggacgacatgcacagtaaactggaggagctgaagaatcagatg
gcttgggctctggtgtctgagatggagaaagaggtgaagcccatgagagagaagctccaa
tcagaggagaggtccaccatcaaatacgaccagaaagtagacgagtggaaggccaaggtg
gtggaggcggagaagaagtacaagggtatccgggagcaactggaggccatcactgtgagg
gtccagcagcttgagccacagagtgctgagctgaagaacgaggctcagagcagaagcaag
gccttcaacacagcccaggccagtgtacacagattcaagaccaacctgagagacctggag
aaggacaaggatcagctctccaggagaattaatgaactcaagttgagtatcagccagacg
tctggtgcggagacccaggtgcgtgttgagcgcatggagaagctgcagacagacctggac
actctgaacttccaggactctaccctaggccagcagatggaacagttccagcaggctgtg
tcccgggccaaggacgagctggaaaagatgatgcgagaggaggaggatctgaagaggtct
atggaggccatcaggaggaagttgcagaccatggagggcagccgctccgaccgcctgcgc
cgcttcggggagaagatgcctgcgctgctcgccgccatcgaggatgccgacaggaagggc
cagttcaggaagaaaccagtggggccgctggggtactgtatccgtctgaaggaccatgag
caggccctggccgtggagaaatgtcttgggagcctgatggtggccttcacctgtgacaac
cacgaggacgagaagttgctgcagggccttatgagagggtactaccaggggggtaggaga
ccccagatcatcacctgccagttcttcaacagggtccatgacaccagtaggcgggctgtg
aaccaccctgactacccgtcagtcctacagtctctggagatcgaggacccagtggttgcc
aactgcctcatcgaccagaggggcatagagaccattctgctcatcaagagtcctgcagag
gcccgcagagtgatgcagggcaggcagccccctagaaactgctaccaggccttcaccaag
gagggagaccagtgctacaacaaccgctactactccaacgaccagaggaggtgtgactac
cttagcagagacgtagaggaggagatcaggcagttgcaggaagagatgcggaacaaggag
gcccacttggatcggttcagccagcagaagcagagggtggaggaggacatcaggaacaac
aacagtctcctgaagagggcctacgacgacaggaagagggccaaggataagttcaggagg
ctccagcaggagatcagtgacctgcagaacgtggaagaaccccagtctgaggacctcaag
cctctggaggaggagctggaggagatcaacaataagatttcagcaggtcgtgctgagagc
gaggaggcccgtagaaagatggcccagctgaaggcttcctgggaggaggtggagcagagg
taccgccagcacaaagactccatcagcactgtggccgaggaggccgaacccatcaaggag
gagctgagtaagagcgatcaggatgtggagaagagcaagcaccataagaaacactacgag
gacaaacgcaaggtccacatcaacaccatacaggccctgaaggccagcctggatctcaag
gagcaggagctcacggcttctgtagtgaaggccacagagatctgtccagagcggtccgag
gtgcgccggacagccaggagtctggacagcgagatcagccgtctgaagctgaagatcagc
acccagcaggaccagcagggcgaccgcgaagaggtcatcaggcaataccaagaggccctt
gagaactacagtaacattaaccagcaggtgaagtgcctcaagcgcttcatccaggtcctg
tgtaagatcatggacgatagacaccgagtctacacagagctgaggaggtttctctcagtg
cgttgcaagatgtactttgactccatgctgtcacagagaggctatatagggaagatgatg
ttcgagcacaagaacgaaaccctatccatctcagtccagccaggtgtgggggataaggct
gctctgagtgacatgcgctctctgtctggaggagagcgctcgttctccactgtctgtttc
gttctctctctctgggccatcgctgaggcccccttccgcgccctcgatgagtttgacgtc
tacatggacatggtgaaccgaaggatatccatggacatgatgttgaaaatcgcttctagc
caacgttaccgacagttcatattcctcaccccacagagcatgagctctctcccagtcaac
aacctgatccggatcctacggctgaaagacccggaccgtggccagacggctcttcccttt
ggacagaggaatgaggaagaggaagaggaggagtga
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