Oncorhynchus mykiss (rainbow trout): 110522629
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Entry
110522629 CDS
T07259
Symbol
hmbox1b
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110522629 (hmbox1b)
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
110522629 (hmbox1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
DUF494
AbiJ_NTD3
HTH_31
HTH_26
Motif
Other DBs
NCBI-GeneID:
110522629
NCBI-ProteinID:
XP_036832221
UniProt:
A0A8C7S9C1
LinkDB
All DBs
Position
4:40868340..40887505
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AA seq
503 aa
AA seq
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MSHYTDEPRFTIEQIDLLQRLRRTGMTKQEILHALDTLDRLDREHGDKFGRRTSSSSYGG
GANSSVSDPNSTTTNNNNNNNTASVSAATTSSTTSSSCSSNHNNGGSSNVNMALASSSTN
STATQTQYLPPRGGLSPSPSNGYDTSPPPGPPPPSAILSSPVSLVAMVQNGGRDSLAATP
NGKLSPPRYPMNSAAAVRPFGFEATEEELDIDDKVEELMRRDGSIVKEEIKSFLGNRRIS
QAVVAQVTGISQSRISHWLLQHGSDLSEQKKRAFYRWYQLEKTTPGATLNMCPAPMALEE
MEWRQTPPPISTAPGSFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAKREEIANACNAV
IQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEATILESHGIDVQSPGGHSNSDDI
DGGDYTEQACDLPYFDKRPMARPFGFYRLEPTSPTQDDGPGHGDHQDPISLAVEMAAVNH
TILALSRTGGVPSDIKTEALDDD
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtctcattacacagacgagcctcgcttcaccatcgagcagatcgacttgctccagagg
ctgcggcgtacgggcatgaccaagcaagagatcctccacgccctggacaccctagaccgg
ctggaccgcgagcacggggacaagttcggtcgtcgcacctcctcctcctcctacggagga
ggagcaaatagctctgtgtccgaccccaatagcaccaccacaaacaacaacaacaacaac
aatactgcctctgtttctgccgccaccacctcctcaacaacatcctcttcctgtagcagt
aatcataataatggtggaagcagtaatgttaacatggccctggcctcatcctccaccaac
tctaccgccacacagacacagtacctccctccacgtggggggctctccccgtcgcctagc
aacggctacgacacctccccaccacccggcccgcccccgccctctgccatcctctcgtcc
ccggtgtcgctggtcgccatggtgcagaacggggggcgggacagcctggcggcaacgccc
aatgggaagctctcgccgcctcggtacccaatgaatagcgctgctgccgtcaggccgttc
gggttcgaggccacggaggaggagctggacattgatgacaaggtggaggagctcatgagg
agggacggcagtatcgtcaaggaggagatcaagtcctttctgggaaacaggagaatctct
caggctgtggtggctcaggtcacaggtatcagtcagagcaggatctctcattggttgctc
cagcacggctctgaccttagcgaacagaagaagagagctttctaccgctggtaccagcta
gagaaaactaccccaggtgccactctaaacatgtgccctgcccccatggctctggaggag
atggagtggagacagaccccaccccctataagcaccgcccccgggagcttccggcttcgg
cgtgggagtcgctttacctggaggaaggaatgtctggctgtgatggagagctacttcaat
gacaaccagtaccccgacgaagccaagagagaggagatcgccaacgcctgcaacgcggtt
atccagaaaccagggaagaagctgtcggacctggagagagtcacatccctcaaagtctac
aactggtttgccaaccgacgcaaggagatcaagagacgggctaatattgaagccacgatc
ttggagagccatgggatagacgttcagagtcctggaggacattccaacagcgacgacatc
gatggaggggactacacagaacaggcctgtgacctgccctacttcgacaagagacccatg
gccagaccctttggcttctacaggctggagcccacttcacccacacaggatgatggtcca
ggccatggagaccaccaggaccccatctctctggccgttgagatggcagcagtcaaccac
accatcctggctctttcccggaccggaggggtgcccagcgacatcaagacagaggccctg
gatgatgactga
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