Oncorhynchus mykiss (rainbow trout): 110523074
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Entry
110523074 CDS
T07259
Symbol
ythdc1
Name
(RefSeq) YTH domain-containing protein 1 isoform X1
KO
K20100
YTH domain-containing protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110523074 (ythdc1)
Spliceosome [BR:
omy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
110523074 (ythdc1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-GeneID:
110523074
NCBI-ProteinID:
XP_036832464
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Position
5:complement(724584..759382)
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AA seq
682 aa
AA seq
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MAVDRRDDKEGELNVLDDILTEAPDQDDELYNPESEQHVNQKKGSKRKNDRGDDHELKRL
RASAHTTRQAAKRSAPSAGGKKLVNLRGVRHPSEYKTEDYYDDRKTHSIRAGGAQRGDPP
KAAHLDKPLGRRREPDRQRIKPLMPELTTEKLMRPSEGSVGRVSTSSKEEAEEEASDQET
GSTAESSEGDRSNMEGEEVMEEEEEEEEEGEKGPEEDEEEEEEEYEQEEGDQRVVNEPPD
YDTRSEASDSQSDSVSFSEGESVHSGSGSDASGSEKKHEKLSSSVRAVRKDQSSKLKYIL
RDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNAAFRSARSVILVFSVRESGKFQGF
ARLSSESHHGGSPIHWVLPAGMNAKMLGGVFKIHWICRRELPFTKTAHLSNPWNEHKPVK
IGRDGQEIEPGCGMQLCMLFPQDESIDLYQVIHKMRHKRRMPSEPRSRGRPPHREPARGD
LGRRRPEEYDIHNRKRPRIDYPAEFPQRPGFMPVPRNPPVDRRFPTGVRRDVFLNGSYND
YMREFHHTIGPPPPWQGMAPYPGMEQPPHHPFYQHHPPPPQAHPPYTGHHPVPHDARFRE
KRVVRSFSSTLHDYDMRVDDFLRRTQAVVTGRRSRPRERDRQRERERPRDARRDRDRDRG
RERDRERDRIRDREKERGRYRR
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgacagacgagacgacaaagagggagagctcaacgtgctggatgacatcctc
accgaggccccggaccaggatgacgagctctataaccctgagagtgaacagcacgtcaac
cagaaaaaaggatctaagaggaagaatgaccgaggggatgaccacgagctgaaacgcctc
cgggcctcggctcacaccaccagacaggccgctaaaagatctgccccctcggctggcggg
aagaaactggtcaacctcaggggggtgcggcacccctccgaatacaagaccgaagattat
tacgacgaccggaaaacccattccatccgagctggtggggcgcagaggggggaccctccc
aaagcagcccaccttgacaagcctctgggccgcaggagagagccagacagacagaggatc
aagcccctcatgcctgagctaaccacagagaagctgatgcgtcccagtgaggggagtgtt
ggcagggtcagcacctcctccaaggaagaggcagaagaggaggcatcagaccaggagact
ggcagcacggctgagtcctccgagggagaccgatccaacatggagggagaagaggtgatg
gaggaggaagaagaggaggaggaggagggagagaagggcccagaggaagacgaggaagag
gaggaagaagagtatgaacaggaggaaggggatcagagagtggtgaacgaaccgccggat
tacgacactcgcagcgaagccagcgactcccagtctgattcagtgtcgttctctgagggg
gagtcggttcactctgggtctggatctgacgcctcaggttctgagaagaagcatgagaag
ctatcctcctctgttcgagccgtccgcaaggatcagagcagcaagctgaagtacatccta
cgagacgcacgcttcttcctgatcaagagcaacaaccatgagaacgtctccctggccaag
gctaagggagtgtggtccactctgcctgtgaacgagaagaagctgaacgctgccttccgt
tctgcccgcagcgtcatcctggtcttctcagtcagggagagtggaaagttccaaggtttc
gccaggctgtcctcggagtcccatcatggagggtctcccatccactgggtcctgcctgct
gggatgaacgccaagatgctgggcggggtgttcaagatccactggatctgcagacgggag
ttaccgttcactaaaacggctcacctttccaacccgtggaacgaacacaagcctgtaaag
atcggccgagatggacaggagatcgaaccagggtgtgggatgcagctgtgcatgctgttc
ccccaggacgagagcattgacttgtatcaagttattcataaaatgcgacacaagcggagg
atgccttcggagccgcgttctcgaggacgcccgccgcacagagaacccgcccgaggcgac
ctgggaaggcgtcggcccgaggaatatgacattcacaacaggaaacgcccaaggattgac
tatccagccgagttcccacagagaccaggctttatgccagttccacgtaacccaccagtt
gaccggcgcttcccaactggagtaagaagagatgtgtttctcaatgggtcctacaacgat
tacatgagagagttccaccacaccattggaccgcctcctccttggcaaggaatggcaccg
taccctgggatggagcagccacctcaccacccgttctaccagcaccatcctccacctccc
caggcacatcccccgtacactgggcaccaccctgtaccacacgacgcccgcttcagggag
aagagagtcgtacgctccttcagctctaccctgcatgactatgacatgcgggtggatgac
ttcctgagacggacccaggccgtggtgacaggtcgccgcagccgccccagagaacgagac
cggcagagggagcgggaacggccccgggatgcccgccgggaccgcgacagagaccgtgga
cgcgaacgtgaccgagagagagaccggatcagagacagggagaaggagagggggcgctac
aggagataa
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