Oncorhynchus mykiss (rainbow trout): 110523162
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Entry
110523162 CDS
T07259
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110523162 (chd1)
03036 Chromosome and associated proteins [BR:
omy03036
]
110523162 (chd1)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110523162 (chd1)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
110523162 (chd1)
SLIK complex
110523162 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
110523162
NCBI-ProteinID:
XP_036832618
Ensembl:
ENSOMYG00000006829
LinkDB
All DBs
Position
5:9694048..9731133
Genome browser
AA seq
1800 aa
AA seq
DB search
MAGRSEDEGVSNSSGESSNSDDESGSGSGSGSSSSSSSSSSSGSGSGSGSDSGSQSDSDS
GKSKEKNEPENKAKIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQSSSNSGSDSSSS
EDSDDDSSGKRRKSGSGSSSGSGSGSGSGSGSDSSAQEQEHSEESDDYEPSHKVKSRKLP
TKANARNGKKSNVQRKKPSAGSSSDDDYDGKKSSSNQGPRRQATQNVSYKEDEEQKTDSD
DLVEVCGEDVPPPDEDEFETLERVMETRIGRRGATGGTTTVYAVEADGDPNANFNPNKEA
GEQQYLFKWKGWSHIHNTWETEETLKLQNVKGMKKLDNFKKKESDKKKWIKCSSPEDVEY
FNCQQELMDDLHSQYQLVERIIGHSNQKSAAGFPDYLCKWQGLSYSECSWEDGALISRKY
QKSIDDYMRRNQSKTIPSRDCKVLKQRPRFIPMKKQPSYIGGEGLQLRDYQLDSLNWMAH
SWCKGNSCILADEMGLGKTIQTISFLNYQFHEHQLYGPFLLVVPLSTLVSWQREIQLWAP
LMNVVVYLGDISSRGMIRTHEWMHVQNKRLKFNILLTTYEILLKDKGFLGNVPWAFIGVD
EAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEIFEEE
HGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNY
KALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDSEFYNKQEALQHLIRSSGKLVLLD
KLLLRLRERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEG
SEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVT
KSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGTAPSSATPFNKEELSAILKFGAE
ELFKEQEGEEQEPQDMDIDDILKRAETRENDPGPSTVGEELLSQFKVANFSMMEEEEIVM
DSERHHRGWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQVNFNGSESRRSRNRR
YSGSDSDSVSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD
AELVDKSEHDLKRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGPTFRISGVQVNAKL
VISHEEELAPLHKAIPADPDERKRYTIPCHSKAAHFDIDWGKEDDSSLLIGIYEYGYGSW
EMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQRQAGTANWRK
RKPRSKKTKAVKPAKVDEVVKSPSSTPHSDKSSEDEIEEEKEVVPVKLPPRRGRTERVVV
KEEPEPEEEPEPEEEKEPKEREMKKEVKKEKKEESREVKEKDLKEKKETKPVDPVHEQEE
VTGEKPSEVKTEVREKVKKTCDTPVHITAGGENISEESEELDQKTFSVCKERMRPVKAAL
KQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEF
DARKLHKLYKHAIKKRQENAQAADGITSTVNTHGFKHADIERLKDNSHHDDSSRDSYSSE
RHHSASRYHEDRDSRDRHTSDPYSRMSGSGGDSRKRPYSAFSNGKDHRDHYRSDRQDSRY
YSDSKHRKVDEHRSGRDGRMDGKERSHSDHRSHSEHHSGSDYSSGHHKSSSRSDSYRYHA
DWQMDQRASASGPRSPRDQRSPRDQRSPYDGRSPLGHRSPFEYSSDHKSTPEQIWSSRKT
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atggctggaagaagtgaagatgagggtgtgagcaacagcagtggagagtcaagcaactcg
gacgatgagtccgggtcgggctctggatcgggctccagctccagttccagttccagtagc
agctcaggaagcggctcaggaagcggctcagactccggcagccagtccgattccgactct
gggaaatccaaggagaagaacgaaccagaaaacaaagccaagatcgacggagccgagttc
tggaagtccaaccccagtatcctagcagttcaaaggtcagctatgctcaggaaacagcaa
ctccagcagcagcaacaacaacagagctcttcaaacagtggatcggattcgtcgagcagt
gaggattcggatgacgactcgagtggaaagagaagaaaatcgggttcaggatcgtcctcc
gggtctggatcgggttctggaagtggttccggttctgactcgtcagcacaggaacaggag
cacagtgaagagtcggatgattacgagcccagtcacaaagtcaaaagcaggaagcttcca
accaaggccaacgccagaaacggcaagaagagcaatgtgcagaggaaaaaaccctctgcg
ggctcatcctcggacgacgactacgacggcaagaagtcgtcgtcgaaccaggggcccagg
cgccaggccacgcagaacgtcagctacaaggaggacgaggagcagaagactgactctgac
gacctggtggaggtgtgcggggaggatgtgcctccgccggacgaggatgagtttgagacc
ctggagcgcgtgatggagacgcggatagggaggagaggagcgactggaggcaccaccaca
gtgtacgcagtggaggcggacggagaccccaacgccaacttcaaccccaacaaggaggcg
ggcgagcagcagtacctgttcaagtggaaaggctggtcccatatccacaacacctgggag
acggaggagacgctgaagctgcagaacgtcaagggcatgaagaaactagacaacttcaag
aagaaggaatcggacaagaagaaatggataaaatgttcttcaccagaggatgtggaatac
ttcaactgtcaacaggaactcatggacgacttacactcacaatatcagctggtggagagg
atcattgggcattcaaatcagaagtcagcggccggttttccggactacctgtgcaagtgg
cagggcctgtcgtactccgagtgcagctgggaggacggagccctcatctccagaaagtac
cagaagagcatagatgactatatgcgcagaaaccagtccaagaccattccctccagagac
tgcaaggtgttgaaacagaggccgagatttattcccatgaagaaacagccgtcctatatc
ggtggagaaggactgcagctccgagactaccagttagacagcttgaactggatggctcac
tcatggtgcaaggggaacagttgcatcctggcagatgagatgggcctgggaaaaaccatc
cagaccatctccttcctcaactaccagttccatgaacaccagctgtacggaccattcctg
ctggtggtgcccctgtccacgctcgtctcctggcagagagagatccaactgtgggccccg
ctcatgaacgtggtggtctacctgggtgacattagcagccggggcatgatcagaacacat
gaatggatgcacgttcagaacaagagactcaagtttaacatcctgctaacaacatatgaa
attctcctaaaagataagggattcctggggaatgtgccatgggccttcatcggcgtggat
gaggcccaccggctgaagaacgacgactcgctcctttataagaccatgatggacttcaag
tccaaccaccggctgctcatcaccggcacgccgctgcagaactcactcaaagagctctgg
tccctgctgcacttcatcatgcccgaaaagttccactcgtgggagatatttgaggaggaa
catgggaagggtagggactctggctacaccagtctacacaaggagctggagcccttcctg
ctgcgtagagtcaagaaggatgtggagaagtctcttcctgctaaagtggagcagatcctc
agagtggagatgagcgccattcagaaacagtactacaagtggattttgacgaggaactac
aaggccctgagtaaaggtaccaaaggtagcacgtctggcttccttaacatcatgatggag
ctgaagaagtgctgcaatcactgctatctcatcaagcccccggaggacagcgagttctac
aacaaacaggaggccttacagcacctaatccggagcagtgggaagctggtgctgctggac
aagctgctgctgcgtctgcgggagcgtggccaccgtgtgctcatcttctcccaaatggtc
cggatgctggacatcctggccgagtacctgaagagccgccagttcctcttccagagattg
gacggctccatcaagggagagatgaggaaacaggcgctggatcatttcaacgctgagggc
tctgaggatttctgcttcttgttgtcaacgcgggcgggcggtctgggcatcaacctggcg
tcggccgacacggtggtcatctttgactctgactggaacccacagaatgacctgcaggcc
caggccagagcccacaggattggccagaagagacaggtgaacatctaccgcctggtgact
aagagctcggtggaggaggagatcattgagcgggccaagaagaagatggtgctggaccat
ctagtcatccagaggatggacaccacgggcaagacggtcctccacaccggcaccgccccc
tccagtgccactccgttcaacaaggaggagctgtcggccattttgaagtttggtgccgag
gagctgttcaaggagcaggagggggaggagcaggagcctcaggatatggacatcgacgat
atcctgaagagagccgagaccagagagaatgaccccggcccctccactgttggagaggag
ctgctctcacagttcaaggtggccaacttctccatgatggaggaggaggagatcgtcatg
gattctgagcgccaccatcggggctgggatgacatcatccccgaggagcagcggcggcgg
atggaggaggaggagaggcagaaagagctggaggagatctacctgctgccccgcatgagg
aactgtgccaaacaggtcaactttaacggcagtgagagccggcgtagtagaaacagacgg
tattccggctccgacagcgactccgtctcggatcgcaagaggcccaagaaacgaggacga
cctcggaccattccacgagaaaacatcaagggcttcagcgatgctgagatacgaagattt
atcaaaagctacaaaaagtttggtggaccacttgaaagactggatgctattgcccgtgat
gccgaactagtggacaagtctgaacatgacctgaagcgtctggcggagacggttcacaac
ggctgtctgaagactctccgggagaacccctgtggaccagagaagacgtcaggaggcaga
agagggaaagtgaaaggccctacgttcaggatctcgggagtccaggtgaacgccaagctg
gtgatctcccacgaggaggagctggcgccgctccacaaagccattcctgccgaccccgat
gagaggaagaggtacacaattccatgccactccaaggcagcacactttgacattgattgg
ggcaaggaggacgactctagcctgctcataggaatctacgagtatggttacggcagctgg
gaaatgattaaaatggaccctgacctcaacctgacacataagctcctaccagacgaccct
gacaagaagccgcaggccaagcaactgcagacgagagcagactatcttatcaaattactg
agcaaggacctggccaaaaaggaagcacagaggcaagcagggacggccaattggaggaag
aggaaaccgaggagtaagaagaccaaagctgtgaagccagccaaggtggacgaagtggtg
aagagtccgtcctctacgccccactcagacaagtcctccgaggacgagattgaggaggaa
aaggaggtggtcccggtaaagctgccacccagaaggggtcgaacggagcgcgtggtggtg
aaggaggagcctgagccagaggaggagcctgagccagaggaggagaaggagcccaaagaa
agggagatgaagaaagaggttaaaaaggagaagaaagaagagagccgcgaggtgaaagag
aaggacctgaaagagaagaaagaaaccaagcccgtggatccagtacatgaacaggaagag
gtcacaggggagaagccgagcgaggtgaagactgaggtacgggagaaggtgaagaaaact
tgtgacactccggtccacatcacagcagggggagagaacatctcggaggagtcggaggaa
ctggaccagaagaccttcagtgtgtgtaaggagaggatgcgaccggtcaaggcggccctg
aagcagctggaccgtccggagaagggcctgtcggaacgcgagcagctggagcacacgcgc
cagtgcctcatcaagatcggagaccacatcaccgagtgtctgaaggagtactccaacccc
gagcagatcaaacagtggagaaaaaacctgtggatatttgtttcaaaatttacagaattt
gatgcaagaaaattgcataaactgtataagcacgcaatcaagaaaagacaagagaacgct
caggcagcagatgggatcactagcactgtaaatacccatggctttaaacatgcagacatc
gagaggctgaaggacaactctcaccacgacgacagcagcagggacagctacagctctgaa
aggcatcactcggcgtcgcgctaccatgaggaccgcgacagccgggacaggcacacctcc
gacccctacagtaggatgtcggggagcgggggggactccaggaagagaccctactcggcc
ttcagcaatggcaaagaccacagagaccactacaggtcagaccggcaggacagcagatac
tacagcgacagtaagcacaggaaggtggacgagcaccggtcaggccgagacggacggatg
gacggcaaggagcgctcccactcagaccaccgctcccattccgaacaccactcgggctcc
gactactcatcgggccaccacaagtcgtcatcgcgaagtgactcctaccgctaccacgca
gactggcagatggaccaacgggcatcggccagcggtccccgttcgccgcgtgaccaacgc
tcgccacgcgaccagcgctcgccttacgacggacgctcgccgttaggccatcggtcgccc
ttcgagtactcgtcagaccacaagagcacgccggagcagatctggagcagccgcaagaca
taa
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integrated database retrieval system
