Oncorhynchus mykiss (rainbow trout): 110523512
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Entry
110523512 CDS
T07259
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110523512 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110523512 (cnot1)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110523512 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110523512 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
110523512
NCBI-ProteinID:
XP_021457944
Ensembl:
ENSOMYG00000015883
LinkDB
All DBs
Position
1:44663927..44681956
Genome browser
AA seq
2424 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLKLS
KVQEVIFGLALLNSCNADLRGFAAQFVKQKLPDLLRSYVDADLGINQEGGFQDIAIEVLH
LLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQARCPVVLAPLLYPEKRDILMDRILPD
SGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMARTHS
GLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELD
HPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFCFA
DYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPD
MLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSM
AEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGVGGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETMATMLGCLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQMD
PLTAMGSLNLSSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSL
SSQLGNTGPLGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPTTFQQSKMKASDLSQVWPEA
NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF
EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA
ALDRFKNRLKDYPQYCQHLASIGHFLQFPLHLQECVQYIEYGQQSRDPPVKMQGSITTPG
SLALAQAQAQSQPPKAPQPGQPSTLVTTATATTTVAKTTTITRPTPGSFKKDVPPSINTT
NIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQY
LVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLK
NLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFR
PQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLE
EQLSAPKKEAKPPEEMIPIVSTGIQHFQTGMPLVGDFLPFAAAPSTPAPTTTCSATGPPT
PQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIK
IAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFA
AALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHAR
QEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGF
LAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNSR
DGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPLWCNKQITRC
LIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDE
RSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMH
SGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDD
LITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEA
TNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINF
QTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFK
YLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL
SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFL
SELRSNLQVGGATLGPWKYLQHNDTSLEQVSNEPGNRYNIQLINALVLYVGTQAIAHIHN
KGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLF
AEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKL
FQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acaaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgtcacggc
cctgaggcggacaggcatttattacgctgtctcttctcccatgtggatttcagtggtgat
ggtaaaagcagtggcaaagattttcatcagtttctgatccaggagtgtgtttcactgatt
tcaaagcctaattttatttcaacactttgctacgccatcgacaatcctttgcactaccag
aagagtttgaagccgtcggcccacttgttcactcagttgagtaaagttctcaagctaagc
aaggttcaagaagtgatatttggccttgctttgcttaattcgtgcaacgcagaccttcgt
ggttttgccgcgcagttcgtcaaacaaaagctccctgatctcctccgctcgtacgtggac
gctgaccttggcattaaccaggaaggtggcttccaagatattgccatagaggtcctgcac
ctgctcctctcccatcttttgtttggccagaagggagccagtggcgtcggacaagagcag
attgacgctttcctcaagacactgtgcagagatttcccgcaggcgcgctgccctgtggtg
cttgcaccgctgctgtaccctgaaaaacgggacattctgatggacaggattctgccagac
tcgggagagttagccaagaccatgatggagagttctcttgcagagttcatgcaggaagtt
ggctatggcttttgtgcaagccttgatgaatgccgcaacataattctgcagtatggggtg
cgagaggttactgccagccaggtggccagggtcctggggatgatggctcgtacccactct
ggcttgtctgatggaatccccctacagtccatctctgctcccggcagtggcatttggagt
gatggaaaggacaagagtgatggttctcaggcccacacttggaatgtagaagttctgatt
gacgtggtcaaagaagttaaccccaatctgaacttcaaagaggtgacctacgagcttgat
caccctggctttatgatccgggacagtaagggacttcagatggtggtgtatgggatccag
aggggcctgggtatggaggtgttccctgtcgacctcatctaccggccctggaaacatgct
gagggacagctgtcattcattcagcactccctcatgagcccagatgtgttctgcttcgct
gactacccctgccacaccgtagccatcgacatactgaaggcgccacccgaggacgataac
agggagatagccacctggaagagcctggacctggtggagagcctcctgcgcctctctgag
gtgggccagtacgagcaggtgaagcagctcttcagttttcccatcaaacactgtcctgac
atgctggtgctggcgctgctgcagatcagcacctcttggcacaccctgcgccacgagctc
atctccaccctcatgcccatcttcctgggcaaccaccccaactccgccatcatcttgcac
tacgcgtggcatggacagggccagtccccctctatccgccagctgatcatgcactcgatg
gcagagtggtacatgagaggagagcagtacgaccaggccaagctgtcccgcatcctggat
gtggcccaggacttgaagtctctttcaatgctgctaaatggtactccatttgcctttgtt
attgaccttgctgcacttgcatctcgccgtgaatacctcaaacttgacaaatggctgact
gacaaaatccgagagcacggggtgggtggcgagccctttatccaggcatgtgtaacgttc
ctgaagaggcgctgtccctctattatgggtggtctggccccagagaaggaccagcccaaa
agcgcccagctccccccggaaacaatggctaccatgctgggctgtctgcagtcctgtgcc
gggagtgtgtctcaagagctctctgagactatcttgaccatggttgccaactgtagcaac
gtcatgaacaaagcccgtcagccaccaccgggggtcatgccaaagggacgtgctcccagc
accagcagcctagatgccatttcccctgtgcaggtatcggtgtctcctctccagatggat
cccctgacagccatgggttcgctgaacctgagcagctctgccacctctcacacacagagc
atgcagggcttccctaccccgctgggctctgccttcagcaacccccagtccccagctaag
gccttccctccactgtccaaccccaaccccagcacaccgtttggggggattggaagcctc
tcttcacagctaggtaacacaggtccgctgggatcaggcattggttctggtcttggaatg
ccagcggtgagcagcgatccgtttgggacgaggaagatgagcacaccgggcctgaatccg
accacctttcagcagagtaagatgaaggcctctgacttatctcaggtgtggcccgaggct
aaccagcactttagtaaggagattgacgatgaggctaacagttacttccagcgcatctac
aaccaccctccgcaccccaccatgtctgtggatgaggtgctggagatgttgcagaggttc
aaggactccaccatcaagcgagagcgggaggtctttaactgtatgctgaggaacttgttt
gaggagtaccgcttcttcccccagtaccccgacaaggagctgcacatcaccgcctgcctg
ttcggggggatcattgagaagggtcttgtcacctacatggcccttggactggccctcaga
tatgtccttgaagccttaaggaagccatttggatccaaaatgtattactttggaatcgct
gctctagatagattcaaaaataggctgaaggactatccccaatattgtcagcacttggcc
tcgatcggccactttctgcaattcccccttcatttgcaagagtgcgtgcagtatatcgag
tatggccaacagtcacgggatcctccagtgaagatgcaaggatccatcaccacccctgga
agcctggcgttggctcaagctcaggcccagtctcagcctcccaaagccccccagcctgga
cagcccagcaccctggtcaccacagctaccgccaccaccactgtcgccaaaaccactacc
atcacccgacctacccctggcagcttcaagaaggatgtgccgccttccatcaacaccaca
aacattgacactctgctagtagcaacagaccaaactgagaggattgtggaacccccagag
aatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaacatgacacag
aaggtcgaggagttaaaggaaactgtgaaagaggagtttatgccctgggtttcccagtat
ctggtcatgaagagggtcagcatcgagcccaacttccacagcctatattccaactttcta
gacaccctgaagaaccctgagtttgtcaaaatggtcctgaatgaaacttacagaaacatc
aaggttctccttacctctgataaggcagctgcaaacttctctgatcgatccctactgaag
aatttgggccactggcttggcatgatcactctggctaaaaacaagcccatcctgtacacg
gatttggaggtgaaatccctcttgttggaagcctatgtcaaggggcagcaggagctactc
tatgtggtcccgtttgtggccaaagtcctggaatccagtttgcgtagcgtgatcttccga
cctcagaatccatggaccatggccatcatgaatgttctggcagagttgcatacggaacat
gatctaaagctgaacttaaagtttgagattgaggtgctgtgtaagaacttatcactggac
atcaacgacctgaagcctggcaccctgctgaaagacaaagacaagttgaagagtctggag
gagcagctctctgcaccaaagaaagaggccaagccccctgaagaaatgatccctattgtt
agcacaggtatccagcactttcaaactgggatgccccttgtcggagactttcttccattt
gcagctgcaccatccactcccgccccaaccaccacttgctcagctactgggccccctacc
ccgcagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcccctcacatc
aatatcaacatcaacatccccttgcttcaagcccaccctcagctcaagcagtgtgtgaga
cagtccattgagcgggctgtgcaagagcttgtccaccccgtagtggaccgctccatcaag
attgccatgaccacctgcgagcagatcgtcaggaaggactttgctctggactcggaggag
tcgcgcatgcgtgtggcagctcatcatatgatgcgcaacctgaccgccggcatggccatg
atcacctgccgggagcccctgctcatgagcatcgccaccaacctgaagaacagctttgcc
gctgccctcagggcccccaccccccagcagagagagatgatggaggaagctgctgccagg
gttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgcagtggagaag
gctggcccagagatggacaagaggctggcgacggagtttgagctgaggaagcatgcccgt
caggagggccgtcgctactgtgaccccgttgtgctgacctaccaggctgagcgcatgcca
gagcagatcagactcaaggttggaggcgtagaccccaaacagctggcggtgtatgaggag
tttgcccggaatgttccaggcttcctacccagcaacgacctgtctcagcccacaggattc
cttgcccagcccatgaagcaacaggcatgggccacggacgacgtggctcagatctatgac
aagtgcatggcagacctggagcagcacctccacgccatccctccagcgctggccatgaac
cctcagacccaggctttgcgcagcctattggaggctgtggccctagccaggaactcccgg
gacggcatcgccgctctgggcctgctgcagaaggctgtggagggtctgctggatgctacc
agtggtgccgatgctgacttgcttctgcggtacagagagtgccacctgctggtgctcaaa
gccctccaggacggccgggcatacgggccactgtggtgcaacaagcagattaccaggtgc
ctgattgagtgccgtgatgagtacaagtacaacgtggaggctgtggagttgctgatcaga
aaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatggagaatggg
ctgcattacatggcggtggcgtttgccatgcagctggtgaagctgctgttggtggatgag
cgcagtgtgagccacattaccgaggcagacttgttccacactatcgagactctgatgcga
accagcgcccactccagggccaacgcacctgaggggcttcctcagctgatggacgtggtc
cgttccaactacgaggccatgatcgaccgggcccacggaggacccaactttatgatgcac
tctggcatctcccaggcatccgagtacgacgacccgccgggcctgagggagaaggctgag
tacctgctgagggaatgggtcaacctgtaccactctgcagccgccggccgggacagcacc
aaggccttctctgcctttgtaggccagatgcaccagcagggcattctgaagaccgatgac
ctgatcactcgtttcttccggctgtgcacggagatgtgtgtggagatcagctaccgcgcc
caggccgagcagcagcacaaccccgcggccagcgccgccatcatcagggccaagtgttac
cataacctggatgcctttgtgcgcctcatcgccctgctggtcaagcactccggagaggcc
accaacactgtcaccaagatcaacctgctcaacaaggttttaggtattgtggttggagtg
ttgatccaggaccatgatgtgagacagactgagttccagcagttgccttaccaccgcatc
ttcatcatgctgttgctcgagctcaatgcccccgagcacgtgctggagaccatcaacttc
cagaccctcaccgccttctgcaacactttccacatcctgaggcctaccaaagcccctggc
tttgtttacgcttggctggagttgatctctcaccgtatcttcatcgccaggatgctggct
cacaccccacagcagaagggttggcccatgtatgcccaacttctcattgatctgttcaag
tacctggcgcccttcctgaggaatgttgagcttaacaaacctatgcaaatcctctacaag
ggtaccctgcgtgtccttctggtcctactgcatgacttcccagagttcctgtgtgactac
cactacggcttctgcgacgtcatcccgcccaactgcatccagctccgcaacctgattctg
agtgccttcccacgcaacatgaggcttccagaccccttcactcccaatctgaaggttgac
atgctcagcgagatcaacatcgcgccgcgcatcctcacaaacttcaccggagtgatgccc
tctcagttcaagaaggatctggactcgtacctgaagacacgctcccccgtcaccttcctc
tctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctggaagtatttg
cagcacaacgacacatctttagaacaggtgtcaaatgagccaggcaaccgttacaacatc
cagctgatcaatgctctggtgctgtatgtgggaacccaggccatcgcacacatccacaac
aagggcagcaccccctccatgagcaccatcactcactcagcccacatggacatcttccag
aacctggctgtggacctggacactgaggggcgttatctcttcctgaatgccatcgccaat
cagctgcgctacccaaacagccacacccattacttcagctgcaccatgctgtacctgttt
gctgaggccaacactgaggcaatccaggagcagattaccagggttcttctggagaggctg
attgtgaacaggcctcatccctggggactgctcatcaccttcatcgagctcatcaagaat
cccgccttcaagttctggagccacgactttgtacactgtgccccggagatcgagaagttg
ttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtgatggagggc
actggtgccagttag
DBGET
integrated database retrieval system
