Oncorhynchus mykiss (rainbow trout): 110523912
Help
Entry
110523912 CDS
T07259
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110523912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110523912
03041 Spliceosome [BR:
omy03041
]
110523912
03009 Ribosome biogenesis [BR:
omy03009
]
110523912
03016 Transfer RNA biogenesis [BR:
omy03016
]
110523912
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110523912
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110523912
Spliceosome [BR:
omy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110523912
Complex C
U4/U6.U5 tri-SnRNP related factors
110523912
Ribosome biogenesis [BR:
omy03009
]
Eukaryotic type
Pre-60S particles
Helicases
110523912
Transfer RNA biogenesis [BR:
omy03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110523912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110523912
NCBI-ProteinID:
XP_021458732
Ensembl:
ENSOMYG00000031219
UniProt:
A0A8C7SIP7
LinkDB
All DBs
Position
5:complement(44500751..44551782)
Genome browser
AA seq
1078 aa
AA seq
DB search
MNSKTSKKYFPRVMTRSFPDAVQEVILLCICIVGFVCFPLVIMADAFGDDLFSVFDEEQT
TSTKKKLAVPEKGKSTSKNGKGGKAEFYAAKSKREADNNGTDEVVFGKRSKLETLSTEEI
NLADCMPKVRVEPVETVEGCNHEVALPANEEYNQLKPRVGKAAKEYPFVLDPFQREAILC
IDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVG
LMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDAERGVVWEETI
ILLPDNVHYVFLSATIPNAKQFAEWICHLHRQPCHVVYTDFRPTPLQHYIFPAGGDGLHL
VVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDPKGRKGGTRGPSNVFKIVKMIMER
NFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNNAIDCLSDDDKKLPQVEHV
LPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPARTVLFTNARKF
DGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAIGKQLLKGSADPLNSAFH
LTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMAKLEEMYNAIEIPNEESVV
TYYKIRQQLAKLSKEIEDFIHKPKYCLPFLQPGRLVKVKNEDADFGWGVVVNFSKKSNVK
AITGDADPLYVVEVLVHCSKESVKNTATEAAKPAAAGEKGEMQVVPVMLHLLTSISSVRL
YSPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIKDPGLKKVIQKVEAFEHRM
YSHPMHSDPSLEAVYSLCERKALIAGDIKGAKRELKKARTVLQMDELKCRKRVLRRLGFA
TSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSAEQVTALLSVFIFQENVNEMPKL
TEQLAGPLRQMQECAKRVAKVSAEAKLEVDEDTYLDKFKPHLMDVVYTWANGSTFAQICK
MTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtaaaacaagtaaaaaatattttccccgtgttatgactagatcgtttccggat
gctgtacaggaagtgatattgctgtgcatttgcattgtgggatttgtgtgctttcctctt
gtaatcatggcggatgcctttggtgacgatttgttcagcgtgtttgatgaagaacaaaca
acttcaactaaaaagaaactagcggtacctgaaaaggggaaatcgaccagtaaaaatggc
aaaggaggaaaggctgagttctatgcagccaagagtaagcgggaagcagacaacaacggg
acagatgaggtggtgtttgggaagaggtccaagctggagactctttctacagaggagatc
aatcttgccgactgcatgcccaaggtgagggtggagccggttgagacagtggaaggatgc
aaccacgaggtggccctaccagccaatgaggagtacaaccagcttaagcctcgtgtgggg
aaagcagccaaggagtaccccttcgttctggatcccttccaacgtgaggccattctgtgt
atcgataacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgt
gcagagtatgccatagctctagctctgagggagaagcagagggtcatcttcaccagcccc
atcaaagctctgagtaaccagaagtacagagagatgtacgaagagttccaggatgttggc
ctgatgaccggtgatgtcaccatcaaccccaccgcctcctgcctcatcatgactaccgaa
atcctgaggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgggtcatc
ttcgatgagatccattacatgagagatgccgagcgtggcgtggtgtgggaggagaccatc
atcctgcttcctgacaacgtccactatgtcttcctgtccgccaccatcccaaacgccaag
cagttcgctgaatggatctgccacctccacagacagccctgtcacgtggtgtacactgac
ttccggcccacccccctgcagcactacatcttcccagcaggtggcgacggacttcacctt
gtggtggatgagaacggagagttcagggaggacaacttcaacacggccatgcaggtgctg
agagacactggtgactctggaggcagcagcggagggggcaaatgggaccccaaggggcgc
aaaggagggacacgagggccatccaacgtgtttaagattgttaaaatgatcatggagcgg
aacttccagccggtcatcatctttagcttcagtaagaaggagtgtgaggcctatgccctg
caggtgtccaagctcgacttcaacacagatgaggagaagaagctggtggaggaggtgttc
aacaatgccatagactgtctgtcagacgatgacaagaagctgccccaggtggagcacgtc
ctgcctctattgaagagaggtatagggattcatcatggaggactcctccccatcctaaag
gaaaccattgagatcctgttctctgaggggcttctcaaggccttgttcgccacagagacc
tttgccatgggcatcaacatgcccgcccgcactgtcctgttcaccaacgcacgcaagttt
gatggcaaagacttccgctggatcacgtctggtgagtacatccagatgtccggtcgagct
ggcaggagagggatggatgagaggggtatcgtcatcttcatggtggatgagaagatgagc
cctgcaattgggaaacagctgcttaagggctcggcagaccctctgaacagtgccttccac
ctcacctacaacatggttctcaacttgctgcgggtggaggagatcaacccggagtacatg
ctggagaagtctttctaccagtttcagcactacagggctgtgcctggggtcgtagagaag
atggcgaagctggaagagatgtacaacgccatagagatccccaacgaggagagtgtggtg
acctactataagatccgccaacagctggccaaactgagcaaggagatagaggacttcatc
cacaaaccaaaatactgtcttcccttcctccagcctggcagactggtcaaggtcaaaaac
gaagatgctgactttgggtggggcgtggttgttaatttctcaaagaagtcaaatgtcaag
gccataacgggtgacgcagaccctctatacgtggtagaggtgctggtccactgcagtaag
gagagtgtgaagaacaccgccacagaggctgccaaacccgctgccgctggggagaagggg
gaaatgcaggtggttcctgtgatgctccacctcctgacctccatcagttcagttcgtctc
tacagccccaaagacctgcggccttatgacaacagacagagcatgctcaaatccatacag
gaggtgcagaagaggttcccggacggcgttccccttctggaccccatcgatgacatgggc
attaaggacccgggcctgaagaaggtcatccagaaggtggaggcattcgaacacaggatg
tactcccaccccatgcactctgaccccagcctggaggccgtctactccctctgcgagagg
aaagccctgattgcgggggatatcaaaggggccaagcgggagctgaagaaggctcgaacc
gtgctgcagatggacgagctcaagtgcaggaagcgcgtcctgaggcgtctcgggtttgcc
acttcctcggatgtcatcgaaatgaagggccgagtggcctgtgagatcagcagtgctgat
gagcttctactgactgagatggtgttcaacggcctgttcaacgatctgtctgcagaacag
gttaccgctctactcagcgtcttcatcttccaggagaacgttaacgagatgcccaagctg
acagagcagctggctggacctctgagacagatgcaggagtgtgccaagcgtgttgccaag
gtgtctgcggaggctaagctggaggtggatgaggacacctacctggacaagttcaagcct
cacctgatggacgtggtttacacatgggctaacggctccaccttcgcacagatctgcaag
atgaccgacgtctttgaagggagtatcatccgctgcatgcgtcgcctggaggagctgctc
cgtcagatgtgtcaagcagccaaggccatcggtaacaccgagctggagaacaagtttgcg
gagggtattacgaaaatcaagagggatattgtgtttgctgccagtttatatctgtga
DBGET
integrated database retrieval system
