Oncorhynchus mykiss (rainbow trout): 110523956
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Entry
110523956 CDS
T07259
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1 isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110523956
Membrane trafficking [BR:
omy04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
110523956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
ANAPC4_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
110523956
NCBI-ProteinID:
XP_036833580
Ensembl:
ENSOMYG00000033226
LinkDB
All DBs
Position
5:46343166..46405753
Genome browser
AA seq
1441 aa
AA seq
DB search
MYFLTGWPRRLLCPLKSEEEPFHIQPNSQRFYFAVLSETQLSIWFSRPSVLIVSYIESVK
AAAQFGFYQQAEWKPDDSMIAVAAANGYILMFDVVGGGEDKYLYEPVYPKGSPRVKVTPE
EQCAPALSLEMKRPIDLEAPITSIKSLQEDLLVSTADGYLHILHWDGVSNGRKAISLCTV
PFSLDLQSARGGPSLDLEGLYIRDMEYCVTLDGFAVVLDDGRLGFISPVASRFTAEQLQG
VWAADVTDGTCVAVNNKYRLMAFGCASGSVLVYMIDTTTGSMQLSHKLELTPKHFPDVWN
KTGSVKLIRWSPDYSVAMVTWECGGLSLWSVFGAHLICTLGEDFAYRSDGTKKDPIKISS
MCWGAEGYHLWVITSREEAELVENMEEAPPPTQTKQAGILQFHFIKSALTVNPCTSNQEQ
VLLHGEDRLYLTCGDPTQVPSSSSDGPHTPHPHNLAHGLEGSPLHHRSAPSPNSISQGLS
TLLGHKHWHVVQIHSTYLESNWPIRFAAIDTAGQCIAVAGRRGFAHYSMSTRKWKLFGNI
TQEQNMTVTGGLAWWNDFVVVACYNFTDRQEELRLYLRSSNLDNAFASVTKLHSDTLLLN
VFRDLIVLFRADCSIFLYSIERRHDGPNPSACVELLQEVSMSRYIPHPALVVSVTLTSVR
TETGIALKAPQQACMAESIMLNLAGQLIMLQRDRSGPQVREKEDQKKLLPFCPPVVLAQC
VENVWTTCRSNKKKRHLLEALWLSCGEAGMKVWLPLFPRDHRKPHSFLSRRIMLPFHINI
YPLAVLFEDALVLGASNETVLYDGLQGPREGREPLEVAFPYCTVERTSQIYLHHILRQLL
VRNLGEQALLLAQSCAALPYFPHVMELMVHVVLEEEATSREPIPDPLLPTVAKFITEFPL
FLQTIVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSR
QHATLLFNTALEQGKWDLCRHMIRFLKAIGSGEMETPPPTPTTQEPSSTGGFEFFRNRSI
SLSQSVDGIAAGKFNLQKTFSMPSGPSTKGSERWSKDSDCAENMYIDMMLWRHARHLLEQ
VRLKDLGCFSAQLGFELIGWLCRERTRVARLDDFVMALKCLHKDFLWPFPVIPACSTSSP
FKDGHRKTVLSQRLLKSQSADSLLNSDMDTAPPQASARNSNHTWLDGLGALGPEPKEMNT
SSSHGGPQTQEAFLSPLTNKTEECSIGSATDLTETSSMVDGDWTMVDENFSTLSLTQSEL
EHISMELANKGPHKSQVQLRYLLHVFMEAGCLEWCVVIGLILREATVIKQVVNFLDSPEV
PPETVQSIRSGLLGVDAWASTDCLGYKPFLTLIRPQLQKLIETAVEQVQPEAFQPGASSP
NSKLTEPQHGCPRAEDSRGPAPLGLALPSEPPGGLVTEDGGAPEEQEEQAADEGAYDCTL
S
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atgtattttttaactggctggccccggaggctactttgtccactgaaaagtgaagaggaa
ccgtttcatattcagcccaactcacagaggttttacttcgctgtgttgtcagagactcaa
ctaagcatctggtttagtcggcccagtgttctgatagtgagctacatagagtcagtgaag
gcagcagcccagtttggcttctatcagcaggccgaatggaagccggacgattccatgata
gcagtggcggctgccaatggctacatcctcatgtttgacgtggtgggaggaggagaggac
aagtatctttatgagccagtctatcccaaagggagtccgcgtgtcaaggtcaccccagaa
gagcagtgtgcccccgctctcagcctggagatgaagagacccatagatctggaggctccc
atcaccagtattaagtctcttcaggaggacttgttggtgtctacagctgatggctacctc
cacatcctccactgggacggagtcagcaatggccggaaggctatcagtctctgcaccgtc
cccttctccctggacctacagtcagcacgcggtggtccgtctctggatctggaggggctg
tacatcagagacatggagtactgcgtgactctggatggctttgctgtggtgcttgacgac
gggaggctgggattcatcagtcctgtagccagcaggtttaccgcggaacagctgcagggc
gtctgggcagcagacgtaacagacggcacgtgtgtggcggtcaacaataagtacaggctg
atggcgtttggttgtgccagtggctcagtattggtgtacatgattgacaccaccacagga
tccatgcagctctcccacaagctggagctcaccccaaaacacttccccgacgtgtggaac
aagaccggctcggtgaagctgatccgctggtcccccgactacagcgttgccatggtgacc
tgggagtgcggcgggctgtctttatggagtgtgttcggagcacacctcatctgtacactc
ggggaggactttgcgtatcggtcagacggcactaagaaagatcctataaagatcagctct
atgtgctggggagcggaaggctaccacctgtgggtcatcaccagtagagaggaagcggag
cttgtagagaacatggaggaggctccacctcctacccagaccaagcaggcggggatactg
cagttccacttcatcaaaagcgccctcaccgttaacccctgcacgagtaaccaggagcag
gttttactacatggggaagaccgtctgtacctgacctgtggtgaccccacccaggtccca
tccagcagctccgatggccctcacacccctcacccccataacctcgcccatggcctggag
ggcagcccccttcaccatcgctccgccccctcacccaactccatctctcagggactcagc
actttactgggacacaagcactggcacgtggtccagattcacagcacatacctagagagt
aattggcctatacggtttgcagccatagacacagcaggccagtgcatagcggtggcaggg
agacgtggctttgcacattactccatgtccaccaggaaatggaagctgtttgggaacatc
actcaggagcagaacatgaccgtgacaggggggctggcctggtggaacgactttgtcgtt
gttgcctgttacaatttcaccgaccggcaagaagagctgcgtctgtacctccggtcgtcc
aacctggacaatgccttcgcctccgtcaccaagctgcactctgacaccctgctgctcaac
gtgttcagagacctgatagtcctcttcagagcagactgctccatcttcctctacagcatc
gagaggaggcacgacgggcccaacccgtcagcctgtgttgagctgcttcaggaggtgtcc
atgtcccgctacatcccccatcctgccctggtggtgtctgtcaccctcacctcggtgcgc
acagagaccggcatcgcgcttaaagccccacagcaggcctgtatggcagagagcatcatg
ctgaacctggctggccaactcatcatgctacagagagaccgttctggaccacaggtacga
gagaaggaagaccagaagaaactgctgccgttctgtccgcccgtggttctggctcagtgt
gtagagaacgtgtggaccacgtgtcgcagtaacaagaagaagcgccacctgctggaggct
ctgtggctgtcctgtggcgaggccggaatgaaggtgtggctgcccctgttcccgcgggac
caccgtaagccccactcgttcctgtcccggcgcatcatgctccccttccacatcaacatc
taccccctggccgtgctgtttgaagatgccctggtgctgggggcatctaatgagactgtg
ctctacgacggcctgcagggtcccagagagggccgggagcctcttgaggtggcgttccct
tattgcacggtggagaggacctcccagatctacctccaccacatcctgcgccagctactc
gtgcgtaatctgggagagcaggccctgctcctggcccagtcctgcgcggcgctcccctac
ttcccccacgtcatggagctcatggtccacgtggtgctggaggaggaggccacctcccgg
gagcccatccccgacccgctgcttcccaccgtggccaagttcatcaccgagttccccctg
ttcctccagaccatcgtgcactgcgccaggaagacggagtacgccctgtggaactacctg
tttgctgccgtgggcaaccccaaggatctgtttgaggaatgtctaatggctcaggacctg
gacacagcagcatcctatctcatcatactgcagaacatggaggttccggcggtgagcagg
cagcacgctacgctgctcttcaacacggctctggagcagggcaagtgggacctctgtcgt
cacatgatccgattcctcaaggccattggctctggggagatggagaccccgcctccaaca
ccaaccactcaggaacccagttcgacgggaggcttcgagttcttcaggaaccgcagcatc
agtctgtcccagtcagttgacggcatcgctgctgggaagtttaaccttcagaagaccttt
agcatgccctctgggccctccactaaagggtctgagcgatggagtaaggacagtgactgt
gctgagaacatgtacatagacatgatgttatggcgtcacgcccggcacctgctggagcag
gtccgcctcaaagacctaggctgtttctccgcccagctgggcttcgagctgattggctgg
ctgtgccgcgagcgcacccgggtagcgcggctcgatgactttgtcatggcgctgaagtgt
ctccataaggacttcctctggccgtttcctgtcatcccagcgtgctcgaccagctcgccc
ttcaaggacggacaccgcaagacggtgctgagccagcggctgctaaagtcccagtcagca
gacagcctgttgaacagtgacatggacacagcacccccgcaagcctcagcacgcaacagc
aaccacacctggctggacggtctcggggcgctggggccggagcctaaagagatgaacaca
tcctcttcccacggggggccacagacacaggaggccttcctctctccactcactaacaaa
acggaggagtgcagtatcggttcggccacagacctgacagagaccagcagcatggtggat
ggagactggaccatggtggatgagaacttctccactctgagtctgacccagtctgagctg
gaacacatctccatggagctggctaacaaggggcctcacaagtctcaggtccagctacgc
tacctgctgcatgtgttcatggaggcgggctgtctggagtggtgtgttgtgattggtctg
atcctgagagaggccacggtcatcaagcaggtggtcaacttcctggacagcccagaggtt
cctcctgagaccgtccaaagtatccgctccggcctgctgggagtcgatgcgtgggcctcc
acagactgcctgggctataaacccttcctgaccctgatccggccccagctgcagaagcta
atagagactgctgtggagcaggtccagcctgaagccttccagccaggggcttccagcccc
aactccaagctgactgagccccagcatggatgccccagggcggaggacagtagagggcct
gctcccttgggcctggccctgccctcggagccccctggagggttagtgacagaggacgga
ggagctccagaggagcaggaggagcaggcggcggacgagggggcgtatgactgcaccctg
tcctga
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