KEGG   Oncorhynchus mykiss (rainbow trout): 110524092
Entry
110524092         CDS       T07259                                 
Name
(RefSeq) laminin subunit beta-1
  KO
K05636  laminin, beta 1
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510  Focal adhesion
omy04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:omy00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    110524092
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    110524092
SSDB
Motif
Pfam: EGF_laminin LAMININ_IV_B Laminin_N EGF_LMN_ATRN LAMB1 F5_F8_type_C ATG17_like
Other DBs
NCBI-GeneID: 110524092
NCBI-ProteinID: XP_021459100
Ensembl: ENSOMYG00000007827
LinkDB
Position
1:47340166..47381610
AA seq 1789 aa
MFIFQIATMLSAGTCVLAQVGIPEFSDVCTEGSCYPATGDLLIGRAHQLSTNSTCGLHRP
EPFCIVSHLQDEKKCFLCDSTDVYVKSVVNTTTGHRVENVVTTFAPNRLKTWWQSENGLE
KVTIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKNWQVYRYFAYDCAAAYPAISP
GPMQKVDDIICDSHYSDIEPSTEGEVIFRVLDPAFRIEDPYSPRIQNMLKITNLRVKFTK
LHTLGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECTPVAGAGAGDGVEGMVHGH
CMCNHNTMGLNCEKCQDFYHELPWRPAKGRNTNACKKCNCNQHSGSCHFDMAVYVSTGNV
SGGVCDECQHNTMGHNCEQCKPFYYQHPERDIRDPSICEPCNCDPVGSLNGGICDRMTDV
SSGLITGQCRCKPNVEGERCDQCQQAHYGLGDHPLGCLACTCNTLGTVPGGSPCHTDSGD
CFCKSLVTGRDCDQCMPQHWGLSNDMDGCRPCDCDLGGALNNDCSQETGQCACREHMFGR
RCDQVESGFYFIALDHYTYEAEDAKFGPGLTVVQRPRPQDRSPTWTGIGFVNVPEGAYLE
FSIDNIPHSMEYDVLIRYEPQLPDQWEEVLMTVMRPSLISADSRCANTMPDDDNQMISLH
PGSRYMVLPRPVCFEAGMNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLEIFTGS
VGGDVATNSAWDTFQRYRCLENSQSVVKTPSTDICHNFIFSVSALLHRGAKACQCDPQGA
LSTVCAASGGQCQCRPNVVGRNCDKCAPATFLFGPSGCRPCDCNPQGSEDAFCHEATGQC
VCIPGAYSRQCDRCLPGHWGFPNCRLCTCNGHTEQCDPYSGKCLGCREQTTGHNCERCLD
GYYGDPVLGSGDHCRLCMCPDGPGSGRQFAGECYRGLDSPYQVFCVCSPGYRGARCEECA
PGYYGNPHENGGQCQPCQCNNNIDMLDQESCNVRTGECLKCLYHTEGQGCHGCKLGYYGD
ALTQNCRKCVCNHLGTNPATCPVVGDCHCDLGSGQCQCLPNVVGQHCDQCAPDTWNMASK
TGCDACDCDPNHSFGTSCNELSGQCSCKPGFGGKTCRECRELFWGEPEVKCNACDCDPRG
IAEQQCHKANGHCVCVEGVSGPRCDVCTRGYTGTFPYCERCHQCFADWDLVVGQLTNQTH
RLVNKVNTIKASGITGPYKHTIDNMEQSAGAIRTILAQNPATQPLSEIQQLLEQATDLME
KMSNKLNLTEEALAQVSSDDNSTNTKLDSLKEDTQKLDRTVKDLLDQVELIKNTDIRGAT
DSVTKYYQQSLAADARANASTSGPGNPVESSAILRQATEDKMNDTREEFHRRQEEHAKRL
DDLAGQLETLDLSELNVKTCGSPADASCVDSPCGGLSCVDFEGNRRCGGEGCGGLVTLAN
NAWQKAKDFDQEILTAMEEVDKLAKMVSEAKVKADEAKLSAQNVLLKTNGTKQRVDQSNE
ELRSLIRQIRDFLTQDAADLESIEAVANEVLAMQMPTTPAQLQTLTDEIRERVGDLAHVE
TILNQSSDDIQRAESLLEQARRVSKEATNVRDTAEMVKQVLEEAERAQSAAAKAIKQATT
DIKGTNDLLTSVESETVDSEYKLNNATQRLLRLERDVTLLREKTLNTSLSSEQTEKDTES
INKVAEQVKKDLDSELKDKYSTVEDLITQKAGGVANAKKRAELLQQEAKDLLLQASDKLQ
LLKDLEKSYEDNQKTLEDKANQLVDLEKSIKELLQEISHKVTVYSTCLF
NT seq 5370 nt   +upstreamnt  +downstreamnt
atgtttatatttcaaattgcgaccatgctatccgcagggacgtgcgtccttgcccaggta
ggcattcccgagttcagcgatgtatgcacggaggggagctgctacccggctaccggagac
cttctcattggcagagcacaccagctctccaccaactccacatgtggcctccaccggccc
gagccgttctgtatcgtcagtcatttacaggatgagaagaaatgctttttgtgtgactcc
accgacgtctacgtcaaaagcgtggtgaacaccaccaccggccaccgggtggagaacgtc
gtgaccacattcgcccccaaccgcttgaaaacctggtggcagtcagagaatggtcttgag
aaagtgaccatccaactgaacttggaggcggagtttcatttcacccacctcatcatgacc
ttcaagaccttccggcctgctgctatggtgatcgagcgctcggctgactttgggaagaac
tggcaggtgtaccgctactttgcatacgactgcgcggcggcataccctgccatatccccg
gggcccatgcagaaagtggatgacatcatctgcgattcgcattactccgacatagagccg
tcgacagagggagaggtcatcttccgagttttggatccagctttccgtattgaagatccc
tacagccccagaatccaaaacatgttgaagatcaccaacctgagggtgaagttcaccaag
ctgcacaccctgggagacaacctgctggactcccgcatggagatcaaggagaagtactac
tacgccatctacgacatggtggtccggggtaactgcttctgctacggacacgcctccgag
tgcacccccgtcgccggggctggggctggggatggagtggagggcatggtacatggccac
tgtatgtgcaaccacaacaccatggggctaaactgtgagaagtgtcaggacttctaccac
gagctgccctggagaccagccaagggacgcaacaccaatgcctgtaaaaagtgtaactgt
aaccagcactcaggctcgtgtcacttcgacatggcagtttacgtctctacgggtaatgtg
agcggcggtgtgtgtgacgagtgccagcacaacaccatgggtcacaactgtgaacagtgc
aagcctttctactaccagcacccagagagggacatccgcgaccccagcatctgtgaacca
tgtaactgtgatccggtgggctccctgaacggcgggatctgtgacaggatgactgatgtg
tcgtctggactgatcactggccagtgtcgctgcaaacccaatgtggagggagagcgctgt
gaccagtgccagcaggcccactatggcctgggtgaccaccctctgggctgcctggcctgc
acctgtaataccctggggacagttcctggagggagtccgtgtcatacagactcaggagat
tgtttctgcaaaagcctggtcacagggagagactgtgaccaatgtatgcctcagcactgg
ggactcagcaatgatatggatggctgcagaccatgtgactgtgacctgggtggagccctc
aataacgactgttctcaggagactggccagtgtgcgtgtagagaacacatgtttggccgg
cgctgtgaccaggtggagtcaggcttctatttcattgccctggaccactacacctacgag
gccgaggatgccaagtttggacctggtttgacagtagtgcagagacctcgcccgcaggac
cgtagccccacctggacagggataggttttgtcaacgttcccgagggggcctacctggag
ttctccattgacaacatcccccactccatggagtacgacgtcctcatccgctacgagcct
cagttaccagaccagtgggaggaggtgttgatgacagtgatgcggcccagtttgatttca
gcagacagtcgctgtgccaacaccatgcccgatgacgacaaccagatgatatcccttcat
cccggatcacgatacatggtgctccccagaccagtgtgtttcgaggcagggatgaactac
actgttcgtctgagcctgcccctctactctgcactcagtgacgtccagtccccatataca
cttatcgactcgattgtgctgatgccccactgtaagaacctggagatcttcacaggttct
gtgggaggtgacgtggccaccaacagtgcctgggacacgttccagcgttaccgctgtctg
gagaacagccagagcgtagtgaagaccccgtccacagacatctgccacaacttcatcttc
agcgtatctgctctgctgcaccggggagctaaagcatgccagtgtgacccgcagggcgcc
ctcagcacggtgtgtgccgccagcggtgggcagtgccagtgtcgccccaacgtggtaggc
aggaactgtgacaagtgtgcccctgccaccttcctgtttggacccagtggctgcagaccc
tgtgattgcaatccccagggatcggaggatgcgttctgccacgaggccacaggccagtgt
gtgtgtatccccggggcatacagccgtcagtgtgaccgctgtctgccgggtcactggggc
ttccccaactgtcgcctctgcacctgcaatggccacacagagcagtgcgacccctactcc
ggaaagtgcctgggctgccgagaacagaccaccggacacaactgcgagaggtgtctggat
ggttactacggcgaccccgtcctgggttcaggggaccattgtcggctctgtatgtgtccg
gatgggcccggaagcgggcgacagtttgccggtgaatgttaccgcggtctggactcccct
taccaggtgttctgtgtctgcagccccgggtacagaggtgccagatgtgaggagtgtgcc
ccaggttactatggaaacccccatgagaacggcgggcagtgccaaccctgccagtgcaac
aacaacattgacatgctggatcaggagtcctgtaatgtcagaacgggtgaatgtctcaaa
tgtctctatcacaccgagggtcagggctgccacggctgcaagctgggttactatggagat
gccctcacacaaaactgcagaaagtgtgtttgtaaccacctgggcaccaatccagccacg
tgcccggtggtgggtgactgccactgtgatctgggcagcgggcagtgccagtgtctaccg
aatgtggtgggtcagcactgtgaccagtgtgcccccgacacctggaacatggccagcaag
acgggctgcgacgcctgcgactgtgaccccaaccactcatttgggacttcctgcaatgag
ctgagtggccaatgctcctgtaagcctggctttgggggtaaaacgtgtcgggagtgcaga
gagctgttctggggagaacctgaagtgaaatgcaacgcatgtgactgtgacccgcgaggc
attgccgagcagcagtgccacaaggccaacggtcactgcgtgtgcgtggagggcgtgtct
ggtccccgctgtgacgtctgcacccgtggctacactggcaccttcccctactgcgaacgc
tgccatcagtgcttcgccgactgggacctggtcgtgggtcagctgaccaatcagacccac
aggctggtcaacaaggtgaacaccatcaaggccagcggcatcaccggaccctataaacac
accatagataacatggagcagagcgccggggccataagaactatcctggcccagaacccg
gctacacagccactgtcagagatacagcagctactggagcaggccacagatctaatggaa
aagatgagcaacaagctgaacctcactgaggaggcgctggcccaggtatcatctgatgac
aacagcaccaacaccaaactggactcactcaaagaggacacccagaagctggatcgcact
gtcaaggatctgctggaccaagtggagctcatcaagaacactgacattcggggagcgaca
gacagtgtcaccaagtactaccagcagtctctggctgcagatgctcgcgccaacgcctca
actagcggcccaggcaaccctgtggagagctctgccattttacggcaagccacagaggac
aagatgaatgacaccagggaggagttccacaggaggcaggaagaacacgccaagagactg
gatgacctggcaggacaactggagacactggacctatcagaactcaacgtgaagacgtgt
ggcagcccagctgatgcgtcatgtgtggactctccgtgtggggggttgagctgtgtggac
ttcgaggggaacaggaggtgcggtggcgaagggtgcggcggtctggtcaccctggccaat
aacgcctggcagaaggccaaggactttgaccaggagatcctcacggccatggaggaagtg
gacaagctcgccaaaatggtgtcggaggccaaggtgaaggcggatgaggctaagctgagt
gcccagaacgtgctgctgaagaccaacggtaccaagcagcgtgtggaccagagcaacgag
gagctgcgcagcctcatccgacagatcagagacttcctcacacaggatgcagcggacctg
gagagcattgaggcagtggccaacgaggtgctggccatgcagatgcccaccacaccagcc
cagctccaaaccctgacagacgagatcagggagagagtaggagacctagcccacgtggag
accatccttaaccagagctccgacgacatccagagagctgagagcctactggagcaggca
cgcagagtcagtaaagaggcgacaaacgtgagggacacagcagagatggtgaagcaggtt
ctggaggaggctgagcgtgcccagagcgcagcggccaaggccatcaaacaggccaccact
gacatcaaaggcaccaatgacctcctgacctcagtggagtcggagacagtggactctgag
tacaagctgaacaacgccacccagaggctgctgcggttagagcgcgacgtcacgctgctc
agagagaagacactgaacacctcactcagctctgaacaaactgaaaaagacacagagagc
atcaacaaagtggctgagcaggtcaaaaaggacctggattcggagctgaaggataagtac
agcaccgtggaggacctgatcacacagaaggccgggggcgtggccaatgccaagaagagg
gcggagcttctacagcaggaagccaaagacctgctgctacaggccagtgacaagctgcag
ctgctgaaagatttagagaagtcgtatgaggacaaccagaagactttggaagacaaggcc
aaccagttggtggatctggagaagtccatcaaagagcttctgcaggagatcagtcacaaa
gtcactgtctacagcacctgtctgttttaa

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