KEGG   Oncorhynchus mykiss (rainbow trout): 110524139
Entry
110524139         CDS       T07259                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018  RNA degradation
omy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110524139
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110524139
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:omy03019]
    110524139
   03041 Spliceosome [BR:omy03041]
    110524139
Messenger RNA biogenesis [BR:omy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110524139
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110524139
Spliceosome [BR:omy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110524139
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 110524139
NCBI-ProteinID: XP_021459177
Ensembl: ENSOMYG00000031820
LinkDB
Position
5:58120065..58124398
AA seq 147 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGAGRGVFGGRGRG
MPGVGRGQQQQEKKPGGGKPQGVKNQH
NT seq 444 nt   +upstreamnt  +downstreamnt
atgctacctctatctctgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacgtacaacggacacttggtcagttgtgacaactggatgaatatcaactta
cgagaagtcatctgcacctcgagggatggagataagttttggaggatgcccgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgaaatcatcgacatggtaaag
gaggaggtggtgtccaagggccgcgggcgaggaggcatgcagcagaacaaacagcagggc
aagggccgagggggaggagcaggagcaggtagaggtgtatttggaggccgtggccgcggt
atgccaggagtgggcagaggccagcagcagcaggagaagaagcctggtggtggcaaacct
cagggagtcaagaaccagcactga

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