Oncorhynchus mykiss (rainbow trout): 110524646
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Entry
110524646 CDS
T07259
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110524646
Enzymes [BR:
omy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110524646
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
110524646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
110524646
NCBI-ProteinID:
XP_021460168
Ensembl:
ENSOMYG00000028184
LinkDB
All DBs
Position
1:complement(51992437..52100196)
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AA seq
787 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGKDLSKASHDEAVEAFRSAKEPIVVQVLRRNTAGR
GSHVSSTQEGDVVDVVDMCTQTDITFEHIMALAKLRATTPPVPDICPFLLSDSCHSLHTM
EQDYYEGRADGGRTEEFEYEEVELCRLNSQEKLGLTLCYRTDEEEDMAIYVSEVGPNSIA
ARDGRIREGDHILQINGQDVQDREEAVAVLSSEDTRNIILLVARPELQLEEAWLDDEHSE
FLEQLKMEMLEEQQREEMELEALQEEQEQPRGTQEDDITATCSSLTQDMDSELGMSDHNA
LLTHIQRRLSQCLRDRQDTGHHRLDEEEEEEELEVEEGDRFQQLLELKCQIRNSGEYDLF
YSRHSTIECSLGEPAGGVQHELRMLNEELCSIELECQNIMQAHKLRKGPGGTQRDQVQQV
STITGHPVPKDQSFLRGSRDSPSRGKLADINKRQEKPEKSDKDSSSAYNTAESSRSTPLA
MDRSPEHSLQRRMVTITNQRNLRSSLASLHATASPSPSPSPTQRSLHRTPIPGKASSPDH
SPNRFESDQTAPADDERSGNGKVKPQHPPRASQIPYLSPSRSSQHRQPNTNIPAHYQSYM
QLIQQRSAVEYAQSQLSLLSVVKEPQLIPTSEPKMEWKVKIRSDGTRYITKRPIRDKILR
ERALKIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMQRSRLESL
RESPQSSSEGRKEVSIIELSHRKMMKKRNKKILDNWMTIQELMTHGAKAPDDPRAKVHNA
FLSVTTV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgcactttacagaaacgagaggaacactataagctgctgtatgag
atcgcacaggtgaatggaaaggacctctccaaggccagtcatgacgaggcagtggaggcg
tttcgctctgctaaggaacccattgtggtgcaggtcctcaggaggaacactgctggccgc
ggcagccatgttagctccactcaggaaggggacgtggtggacgtggtggacatgtgcacg
cagaccgacatcacctttgaacatatcatggccctggccaagctccgggccactactcct
cccgtgccggacatctgccccttcctgctgtctgacagctgtcactctctccacaccatg
gaacaggattactatgaggggagagctgatggagggaggacagaggagtttgagtatgag
gaggtggagctgtgtcgactgaacagccaggagaagctgggcctgacgttgtgctacagg
acagacgaggaggaggacatggctatctatgtcagtgaggttgggccaaacagcatcgct
gcaagggacgggcgcataagagaaggagaccacattttacagatcaatggtcaggatgtg
caggacagagaggaggctgtagctgtgctctccagtgaagacacaaggaatatcatactg
ctggtcgccaggcccgagttacagctagaggaggcgtggttggatgatgaacacagtgag
ttcctggagcagttgaagatggagatgttggaggagcagcagagagaagagatggagctg
gaggcactacaggaggaacaggagcagcccagaggaacacaagaggatgacatcactgcc
acctgttcctccctaactcaggacatggacagtgagctggggatgtctgaccacaatgcc
cttctaacccacatccagagacgactgtcccagtgcctgagggatagacaggacactggg
catcatcgtctggacgaggaagaggaggaagaggagttggaggtggaggagggtgaccgc
ttccagcagctcctggagctgaagtgtcagatccgtaacagcggggagtacgacctgttc
tacagcagacacagcaccatcgagtgtagtctgggagagccggctggcggcgtgcagcat
gagctccgcatgctcaacgaggagctctgcagcattgagcttgagtgccagaacatcatg
caggcccacaagctccgcaagggaccgggggggacccagagagaccaggtgcagcaggtg
tcaaccataaccggccacccagtgcccaaggaccaaagcttcctacgaggcagcagggac
tcgcccagcaggggcaagctggctgacatcaacaagcgccaagagaaaccggagaagtca
gacaaggacagctcgagcgcctacaacacggcagagagctcgcgcagcacgccgctggcc
atggaccgatcccccgagcactccctccagaggaggatggtcaccatcaccaaccagagg
aacctccgcagcagcctggcaagccttcatgccacagccagccccagtcctagtcccagc
ccaacacaacggtcgctccaccgaacccccatcccaggcaaggccagtagccccgaccac
agccccaaccgcttcgagtcggaccagactgccccggcagacgatgaaaggagcgggaac
gggaaggtgaagcctcagcatcctcccagggcttcccagatcccttacctctccccgtcc
cgtagctcccagcataggcagcccaacaccaacatcccggcacactaccagagctacatg
cagctgatccagcagcgctcggccgtggagtacgctcagagccagctcagcctgctcagc
gtggtcaaggagccccagttgatccccaccagcgagcccaagatggagtggaaggtcaag
atccgttccgatggcacgcgctacatcacaaagagacccatcagggataagatcctgcgg
gaacgcgccctcaagatcaaggaggagcgcagcggcgggatgaccacggacgacgacgct
atgtccgagatgaagatggggcggtactggagtaaggaggagaggaagcagcatctggtc
agggctaaagaacagcggaggagacgagagttcatgcagcggagcaggctggaaagcctg
agggagagtcctcagagcagcagcgaaggacgcaaggaggtcagcatcatcgaactgagc
cacaggaagatgatgaagaagcgcaacaagaagatcctggacaactggatgaccattcag
gaactgatgactcacggggccaaggcccctgatgaccccagggccaaagtacataacgcc
ttcctgtcggtcaccactgtataa
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