Oncorhynchus mykiss (rainbow trout): 110524813
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Entry
110524813 CDS
T07259
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110524813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110524813
03019 Messenger RNA biogenesis [BR:
omy03019
]
110524813
04121 Ubiquitin system [BR:
omy04121
]
110524813
Enzymes [BR:
omy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110524813
Transcription factors [BR:
omy03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110524813
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110524813
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110524813
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110524813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-UDP
RDD1
zf-CCCH_2
DZR_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
110524813
NCBI-ProteinID:
XP_021460402
Ensembl:
ENSOMYG00000044648
LinkDB
All DBs
Position
1:52707550..52722838
Genome browser
AA seq
848 aa
AA seq
DB search
MSHSPEIKDDSMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKMNPSFLQTPTCSGEKSKSKSSNSTQRPSNGKDGWPTLSVYGGKLANGLSEDRKS
PPLLDCCLDPEVMTSDGLGLGLGPDTGMGSVQGAALSPFSSNCDSNGPSDKPPESMGMVN
GETLQQMPNRESPSPPPGLTKPPSSLVVPITVADLTARSPFEGAAAESQSLFSDNSNFRH
PNPIPSGLPPFASSPRGGSDWPMTPEPQSLFASDTIPVSSSTDWQAAFGFGSSTKQQQDD
DLGFDPFDVTRKALADLIEKELSVQDQPSPLGSPSPFGLHHPGSHHGLHMPLSNPNHFPS
SIGPPPRLSQLHHRHISSSFSFPGSQSQSSHHGGSQAAQAAAARHTWMGMPPSARSNNHL
LSHLNHSANAGGGHSNFLDLSMPPQHHSHNTGLGGIPMSENSSSIDGLNVKEWQDGLRAL
LPNININFGGLPNSSSSSSSSSSSSMNHMGGPGGLNGPGGLSHSLSWDGTASWMDPAIIT
GSIPASAGSSLDCLQEDQNPPHWLKSLQALTEMDGPALPSLPQQPQNQQHQSLHHSHHHG
LLDQASSHPHLHHRAGSGWAPYLPGLTQPTHPNPSQFHSPPPGFQTAFRPPGQSATELLQ
SASAGDRH
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccccgagataaaggacgactccatggagtgccctctgtgcatggagccg
ctggagattgacgacgtaaacttctttccctgcacctgcggctaccagatctgccgcttc
tgttggcaccgcatccgcacagatgagaacggcctctgccctgcctgcagaaagccgtac
ccggaggaccctgcggtgtacaagcccctgtcacaggaggagattcagaggataaagaat
gagaagaagcagaagcagaacgagaagaaacagaaggtgacagagaatcggaaacacctg
gccagtgtcagggtggtgcagagaaacctggtttttgttgtcgggctctctcaaaggctt
gcagacccagaggttctaaagaggccagagtattttgggaagtttgggaaaatacacaag
gtggtcatcaacaacagcacatcatatgcaggttcacagggtcccagtgctagtgcctat
gtcacttacatccgctctgaagacgccctcagagcaatacaatgtgtgaacaatgtggtg
gtggacggtagaacactcaaggcttctttaggcacaacaaaatactgcagttacttcctc
aaaagcatgcagtgtcccaaaccagactgtatgtatctacacgagctgggggacgaggcg
gctagctttacgaaagaggagatgcaggccgggaaacaccaagaatatgagcaaaaacta
ctccaggacctctacaaaatgaaccccagctttctacaaacaccaacgtgttcaggggaa
aagtccaaaagcaaatcttcaaattctacacaaagacccagcaacggcaaggacgggtgg
ccaacactatcggtgtatggtggcaaactggccaatgggctgtcagaggacaggaaatct
cctccgctgctagactgctgtctggacccagaagtcatgacctcagacgggttaggactt
ggcctggggccggacacagggatggggtctgtccagggggctgccctgtccccattctct
tctaattgtgacagcaacggtcccagcgacaaacctccggaatcaatgggtatggtgaat
ggagagactttacaacagatgcctaaccgcgagtccccttcccctcccccggggctgact
aagccccccagcagtctggtggttcccatcactgtagcagacctcaccgcccgctcgccc
ttcgagggggctgctgcagagtcccagtccctgttctccgacaacagtaacttcagacac
cccaaccccatcccgtccggcctgccccccttcgccagctcgcctagagggggatccgac
tggcccatgacccccgaaccacagagcctcttcgcatcagacacaataccggtctcctcc
tccacagactggcaggcagccttcggcttcggctcctctactaaacagcagcaggatgac
gacttgggcttcgacccctttgacgtgacacggaaggccctggctgacctcattgagaag
gagctgtcagtccaggaccagcccagtcccctggggtcccccagcccctttggcctccac
caccccgggtcccaccacggcctccacatgcccctctccaaccccaaccatttccccagc
agcattggacctccaccccggctctctcagctccaccacaggcacatttctagctccttt
agtttccctggttcccagagtcagagcagtcatcatggtggaagtcaggctgcccaggcc
gctgcagctcggcatacctggatgggcatgcctccctcggcacgcagcaataaccacctc
ctctcacacttgaaccactcggccaatgctggaggaggacatagcaacttcctggacttg
agcatgcctcctcagcaccacagtcacaatacagggctgggagggatccccatgtcagaa
aacagcagttctatagacggcctcaatgtgaaagaatggcaggacggtttgagagctctc
ctccccaacatcaacatcaacttcgggggtctccccaactcctcctcctcttcctcttcc
tcctcttcctccagtatgaaccacatggggggtcccggggggctaaatgggccaggggga
ctctcacacagtctcagctgggatggtacggccagctggatggacccagctatcatcaca
ggtagcatcccagcctcagcaggcagcagtttagactgtctccaggaggaccagaaccct
ccccactggctcaaatccctacaggccctgacagagatggacggccctgcactgccatca
ctcccccagcagccccagaaccagcaacaccagtccctccaccacagccaccaccatggc
ctcctagaccaggcctcctcacacccacacctccaccacagagcaggctctggttgggcc
ccctacctgcccggcctgacccagcccacacaccccaaccccagccaattccacagccct
cccccaggcttccagacagccttcagacccccaggccaaagcgccacagagttgctacag
agcgcctccgccggggaccgccactaa
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