Oncorhynchus mykiss (rainbow trout): 110525249
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Entry
110525249 CDS
T07259
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110525249
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110525249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
ERCC3_RAD25_C
CUE
HTH_8
Motif
Other DBs
NCBI-GeneID:
110525249
NCBI-ProteinID:
XP_036835259
UniProt:
A0A8K9UCS0
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All DBs
Position
6:complement(10509330..10534303)
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AA seq
1033 aa
AA seq
DB search
MSLFNLDRFRFDNNKTSNQDKYTGSVSPESEKENKPARVTTPIANLGKYGRGVVFEDVIS
DPDDDLASDSRRDKLTKVVNSFREPVKLEVREMTEPYDKEDQVDKALEERLDKLQEIFPK
RNRKELLEVIESTSTLDGAVASCLMMFGDKDSKRNRKPDGSSSCRDKDVVQQPSKRRRTS
LAEDSEEKGAEPNWERQETMVRKLQRKFPDQDKEELRAVLQEHEWNIADALEVLRMFSDP
EEYTSSPEVKQKEPKAKSDTKPSNSKSDAKPSRESKDSMEEAKPSRESKDSMEEAKPSRE
SKDGMEEAKPSKASPLKWMFKKFAPESKPTSSSNLQSLKMSNGTSMARKEAVERKRKAHT
SDERASSSEDEEATSSEFEGEDEELDSGAEDEGTSTLQGQILLFFQEASLDELSLITGCS
LKKAKKIVELRPFAFWHKLKELFHKEKGLSVELLLGCRVVLRERAVVQGLMSKCQNISGK
MVKGVSQVIDNGMGSMTQPSILNRKLKLKPYQLIGLKWLLLLHQHKLSGILADEMGLGKT
IQAIAFLARLYQDGIKGPHLITVPSSTLDNWVRELKLWCPSLKVLVYYGSMEDRQYLRHD
ILNNRVDFHIIVSTYNLAIGNDSDRSLFRKLKLKYAVFDEGHMLKNMKSLRYRHLMAINA
EHRLLLTGTPVQNNLLELMSLLNFIMPSMFSSSTTQIAKMFSMKSHEEQSRFERDRIAQA
KLIMKPFILRRVKSEVLKLLPAKEEKLVFCPMSEKQQQLYQTMVGMFKKSAIGEKRELCN
VMMQLRKMANHPLLHRQYYTTERLEAMSSLMLKEPTHFDADPVLIQEDMAVMSDFELHRL
CQQYSSLDKYQLGKDLLLDSGKFHLLQTLLATLKTKGDRVVLFSQFTMMLDILEILLKHL
GHRYIRLDGSTPLADRIVLIDDYNTDPEIFVFLLSTRAGGLGINLTSANVVIMHDIDCNP
YNDKQAEDRCHRLGQTRTVQVIKLIQKDTIEGCMLQLGQKKLKLEQAMTAAEEGDEGTIP
EDMASLLKASLGL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgagtttatttaatttggaccggtttcgttttgacaataataaaacgtcaaaccaggac
aaatacaccggttccgtaagtccagagtcagaaaaggagaataaaccagcacgagtaaca
acacctatagccaaccttggaaaatatgggcgaggagtagtgtttgaagatgtcatcagt
gaccctgatgacgatttggcaagtgattcgaggagggataaattaacgaaagtggtgaat
tctttcagggaaccagtgaagctagaggtaagagagatgactgagccatatgataaggaa
gaccaagttgacaaggcgctggaagagagactggacaaactgcaggaaatcttccctaaa
agaaacaggaaggagttgttggaggtgattgaaagcacaagcactttagatggtgccgta
gcctcatgcctgatgatgtttggtgacaaagactcaaagaggaataggaaaccggacgga
tccagcagttgtcgagacaaagatgtggtccagcagcccagcaagaggaggagaacgtct
ctggctgaagactctgaagagaagggcgcagagcccaactgggaaagacaggagaccatg
gttaggaaactgcagaggaaattccctgaccaggataaggaagaactcagggctgtgctc
caggaacacgagtggaacatagccgacgccttggaggtgcttcgcatgttctctgaccca
gaggaatacaccagctcccctgaagtcaagcaaaaggaacccaaagccaagagcgacacc
aaaccaagcaacagcaagagtgacgccaagccaagcagagagtccaaggacagcatggag
gaagccaagccaagcagagagtccaaggacagcatggaggaagccaagccaagcagagag
tccaaggacggcatggaggaagccaagccaagcaaagcttcccctctgaaatggatgttc
aagaaatttgcccctgaatccaaacctacctcctcttcaaatttgcagagcctgaagatg
tccaacgggaccagcatggctagaaaggaggcagtggaaaggaagaggaaggctcacacc
tctgacgagagggccagcagctcggaggacgaggaggcgaccagcagcgagtttgagggc
gaggatgaggagctggactctggggcggaagacgagggcacatccacgctacaaggccag
attctgctcttcttccaggaggcctcgctggacgagctgtccctcatcaccggctgttcg
ttgaagaaggccaagaagattgtggagctgcggccttttgctttttggcacaagctgaag
gagctgttccacaaggagaaaggcctgtctgtggagctgctgctgggctgcagggtggtg
ctgagggagagagccgtggtccaaggtctcatgtccaagtgccagaacatctcgggcaag
atggtgaagggagtcagccaggtcatcgacaacggcatgggctccatgacccagccctcc
atcctcaacagaaagttaaaattgaaaccctaccagttgattgggctgaagtggcttctc
ctgctgcaccaacacaagctgagtggaatcctggctgatgagatgggtttggggaagacc
atccaggccatagccttcctggccaggctgtaccaggatggcatcaaaggcccccacctc
atcactgtgccctcctccaccctggataactgggttcgggagctaaagctgtggtgcccc
agtctcaaggtgctagtctattacggctctatggaggaccggcagtatctgcgacatgac
attctgaataatcgggtggacttccatatcatcgtgtctacatacaacctggccatcggc
aacgacagcgaccgcagtctcttccgcaagctcaaactgaagtacgccgtgtttgacgag
ggccacatgctgaagaacatgaagtccctccgttaccgccacctcatggccatcaatgct
gagcaccggttgctcctgaccggcacccctgtgcagaacaacctgctggagctgatgtcg
ctgctcaacttcatcatgccctccatgttctccagcagcaccacgcagatagccaagatg
ttctccatgaaatcccatgaggagcagagtcgtttcgagagggaccgcatcgcccaggct
aaactcatcatgaaacctttcatcctcagacgagtcaagagtgaggttcttaagctgctg
ccagcgaaggaggagaagttggtattctgcccaatgagtgagaagcagcagcagctttac
cagaccatggtgggcatgttcaagaagtctgccatcggagagaagagagagctgtgcaac
gtgatgatgcagctgaggaagatggccaaccaccctctgctccaccgacagtactacacc
acagagagactggaggccatgagtagcctcatgctcaaggagccgacccattttgatgca
gacccagtgctgatccaagaggacatggctgtgatgtctgactttgagctccacaggctg
tgccagcagtactcgtccttggacaaataccagctgggcaaagaccttctactggactct
gggaagtttcacctgctccagacactacttgccacgctcaagaccaagggagaccgagta
gtgctcttcagtcagttcaccatgatgctggacatcctagagattctgctcaaacacctg
ggccaccgctacatcagactggacggctccacgcccttagcagacaggatcgtgctgatt
gatgactacaacacagacccggaaatctttgtgttcctgctgtcgacgcgggccggaggc
ctgggtatcaacctgacctcggccaacgtggtcatcatgcatgacatcgactgcaaccct
tacaacgacaaacaggctgaggaccgttgccacagactagggcagaccaggacagtccag
gtgattaagctgatccagaaggacaccatagagggctgcatgctgcagctgggtcagaag
aaactcaaactggagcaggccatgactgctgccgaggagggtgacgagggcaccataccc
gaggacatggcctctctgctcaaagcatcactgggcctgtga
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