Oncorhynchus mykiss (rainbow trout): 110525318
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Entry
110525318 CDS
T07259
Name
(RefSeq) retinoic acid receptor RXR-alpha-B
KO
K08524
retinoid X receptor alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03320
PPAR signaling pathway
omy04148
Efferocytosis
omy04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110525318
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
110525318
03320 PPAR signaling pathway
110525318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110525318
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
omy03310
]
110525318
Transcription factors [BR:
omy03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
110525318
Nuclear receptors [BR:
omy03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
110525318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
110525318
NCBI-ProteinID:
XP_021461011
Ensembl:
ENSOMYG00000041403
UniProt:
A0A8C7U598
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Position
6:complement(16538121..16574149)
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AA seq
511 aa
AA seq
DB search
METKPFLSFGFLKSQCSVAPPPQRWCPGETGGSPTACLCFTGICPLHQHRRRTDPSGQLS
SPSLRSHHAHRGMGAHRLHPSLLIPSSVSSSGPPHSPICTLSSPITSLALPFSVSSRPAG
HHSTSSSMGFSPQLSFPVIPSSSIIISTEDIKPPLGQNRVLKVPAQPTCTCLSFNKHICA
ICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYTCRDNKDCLIDKRQRNRCQSCRYQKCL
AMGMKREAVQDERQRAKERRESEADSLGCANEDMPVERIEEAELAVELKTKTCIKGSLGM
PTNSPNDPVTNICQATDKQLFNLVEWAKMIPHFSELVLDDQVILLRAGWNELLIASFSHR
SIIVNDSILLANGLQLHRNSAHSAGVGSIFDRVLTELVSKMRDMQMDKSELGCLRAIVLF
NPDSKGLSNPGEVEALREGVYASLEAYCKHKYPGQPGRFAKLLLRLPALRSIGLRFLEHR
FFFKLIGDTPVDTFLTEMLEAPRQMTKQHCS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccattcctttcttttggcttcctcaagagccagtgctcggtagcccca
cctcctcagcgatggtgcccgggggagacgggcggctcgcccacagcatgcttgtgcttc
acaggcatttgcccacttcaccagcacaggagacgcacagacccctccggtcagctgtcc
tcaccatcgctccgctcacaccacgcccataggggaatgggtgctcaccgcttgcaccca
tctctgctcatcccatcgtctgtgagctcctcaggacctccacactcacccatctgcacc
ctgagctcgcccatcaccagcctggctttgcccttttctgtcagcagccgtccagcggga
caccactctacctcctccagcatgggcttcagcccgcagctcagcttcccagtgatcccc
agtagcagcatcattatcagcacagaggacatcaaacccccactgggccaaaacagagtg
ctaaaggttcctgctcagcccacatgcacctgtctctcctttaacaaacacatctgtgcc
atctgtggagaccgcgcctcaggtaaacactatggagtatatagctgtgaaggttgcaag
ggcttcttcaagagaacagtgaggaaagagctgacgtatacctgtagagacaacaaggac
tgtctgattgacaagcgccaacgcaacagatgtcagtcctgccgctaccagaagtgtctg
gccatgggcatgaagagagaagctgtgcaggacgagcgccagagagccaaggagaggcgc
gagagtgaggcggactcgttaggttgtgctaacgaagacatgcctgtggagaggatagag
gaggcggagctcgctgtggagctaaagaccaagacatgcatcaaggggagcctgggcatg
cccaccaactcacccaatgacccggtgaccaatatatgccaggcaacagacaagcagctc
tttaacttggtggagtgggccaagatgatcccccacttctcagagctggtcctggacgac
caggtcatcctcctaagagcagggtggaatgagctcctcatagcttctttctcccatcgc
tccatcatagtgaacgacagcattctgctggcaaacggactccaactgcatcgcaacagc
gcccacagtgcaggggtggggtccatctttgacagagtgctgactgagcttgtgtcgaaa
atgcgagacatgcagatggacaagtctgagttagggtgccttcgagccatcgttctcttc
aacccagactcaaaaggcttgtcaaacccaggggaggttgaggctctcagagaaggggtg
tatgcttcactggaggcatactgtaaacacaaataccccggccaaccaggaagatttgcc
aaactgttacttcgattaccagccctacgttccattggcctcaggtttctggagcaccgg
ttcttcttcaaactgataggggatacacccgttgacacattcctcacggaaatgttggaa
gctccacgccaaatgacgaaacagcactgcagttga
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