Oncorhynchus mykiss (rainbow trout): 110525473
Help
Entry
110525473 CDS
T07259
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04010
MAPK signaling pathway
omy04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110525473 (cacna1ba)
04020 Calcium signaling pathway
110525473 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
omy04040
]
110525473 (cacna1ba)
Ion channels [BR:
omy04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
110525473 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
110525473
NCBI-ProteinID:
XP_036835500
Ensembl:
ENSOMYG00000018918
LinkDB
All DBs
Position
6:complement(21499304..21689141)
Genome browser
AA seq
2371 aa
AA seq
DB search
MARFEEELSNRRGGVCQAGPPRGAGKPAGPPSGPRVYKQSMAQRARTMAIYNPIPVKQSC
LTVNRSLFIFSEDCIIRKYAKKITEWPPFEYLILATIIANCIVLALEQHLPASDKTPMSE
RLDDTEPYFIAIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGMLATVGADFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGMLLFFAILMFAIIGLDFYMGK
FHRTCFSTDTGEQAAEFPCGLEAPARTCENGTVCQEYWIGPNYGITNFDNILFAILTVFQ
CITMEGWVDILYNANDASGNTWNWIYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKHAEEMSPLDGVWYKRKYNNPVLKR
AKKSKNDLINAEEGEDHFTDISSVAPPGSPFTRASLKSSKNDSASYFRRKEKRLRFTIRR
LVKAQSFYWTVLCLVGLNTLCVAIVHYDQPEWLTYALYLAEFVFLGLFLTEMSMKMYGLG
PRNYFHSSFNCFDFGVIIGSIFEVIWAVVKPGASYGISVLRALRLLRIFKVTKYWNSLRN
LVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGMFNFEEETPTTNFDTFPAAILTVF
QILTGEDWNAVMYHGIESQGGVRWGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQE
LTKDEEEQEVAITKKMALQKVKEVKEVSPISAANISITGFVKQSRGALSCSSSVCSVNSL
MEQQKSLKMMSVWEQRTTQLRRHNLRASSEALYSELDPEERLRMSSALHIRPDMKTHLDR
PLVVEPHDGPGPMGYLKPWTPEKTDNPGDPAGPQPRRRHRDRERPIDKANEIGDSGKEGR
HHVHHSRSKDPNGTRCKEGKSERSHSREGGRRHHHQTSVDEGGREGTGTGEREHRHHHSH
RQAREGNGTVNSGRKDERRSRHKDGRSGEICSRGENRANGERRRQKTHSYRGKSTLEGEE
HSERERGKGHRDRYVESEGDSMATSTQQDPGDQRWGTEIPEDSDNQRNVRRTGRTAIHIP
PVTITSPPGETTLIPMNSIDCETIPMNKEKKTLEALTRTGPRPILPYSSMFVFGQTNMVR
RLCHYIVSLRYFEMCILVVISMSSIALAAEDPVQANAPRNNVLKYLDYVFTGVFTFEMVI
KMVDLGLLLHPGSYFRDLWNILDFIVVSGALVAFAFSGSKGKDISTIKSLRVLRVLRPLK
TIKRLPKLKAVFDCVVNSLKNVFNILIVYMLFMFIFAVIAVQLFKGKFFYCSDESKALEK
DCRGNFLDYDKDEVAAQPRVWKKYEFHYDNVLWAFLTLFTVSTGEGWPDVLKHSVDATFE
DQGPSPGYRIEISIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSECSLEKNERACI
DFAINAKPLTRYMPENVQSFQYRMWKFVVSPPFEYAIMIMIALNTVVLMMKFHGAPDFYE
AMLKHFNIVFTALFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITDIVVTEINTTDR
LLNLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQV
FGNIELNEDTSITHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSHRACDERSGNLGKE
CGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDP
AACGRIKYLDMYQILLHMSPPLGLGKKCPPRVAYKRLVKMNMPIADDNTVHFTSTLMALI
RTALEIKLASGMVAQRLSDAELKKELSQVWPSLSQKTMDLLVTPHKPNELTVGKVYAALM
IFDYYKQNQAKRLKEQQQQQQNATGSQGKVGALFKPILPLTHKQDKGKEKAMTNVEPPCE
LLPQPQSQALPRPSSTLLNNGGTLPGHDGTMKGSSSWVSEKSREVHRPRNKTPVQRGQSE
DVPNLTIPQESVEMRKMDTSCSTVPGSGLESQGRAVSMPRLNAELQRSKSRHSPGTLLAP
VPDCSPVKRSASTHAPQRPQEVNLHEYTLERPSTQERPHHHHHHHRCHHHRERDKKQRSL
DRTPSTIGAPGDPAAEPSPRDRVQDRGRSHERKNHSTAGEKQRYYSCDRYSSREHCHTTK
SATTSCATSPSEVQEPNINKQGSGSVKGSPVMLTSGAITPSRGRRQLPQTPLTPRPGVTF
KTANSSPVHFVSAQCGSGLPTLSPGRLSRGLSEHNALLHSGTSHIPFPITRISSEPFLGY
SHSDPQGQGSPYYNLRDELMSPYAARARSPRTARPQMRPGALHLPPPPQKRRVVPNECHF
TFGGNGNASLGSDSGARPPRYYHEAEEDEWC
NT seq
7116 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcttcgaagaggaactatctaaccggcgtggaggggtctgtcaagcgggccca
ccaagaggggcaggtaagccagcaggccccccaagcggtcctagggtgtacaaacaatca
atggcccaacgagccaggacaatggccatttacaaccccatccctgtcaagcagagctgt
cttactgtcaaccgttctctattcatctttagtgaggactgtatcatacggaaatatgcc
aaaaagattaccgaatggcctccatttgaatacctgatcctggccaccattatagccaac
tgcatcgtccttgccttggagcagcacctaccagccagcgacaaaacccccatgtcagag
cgcctggacgacacagagccctattttattgcaatattttgttttgaagctggcattaag
atcatcgcccttggttttgcgtttcacaaaggctcctatcttcggaatggctggaatgta
atggactttgtggtggtactaacagggatgctggctacagtgggagcagactttgacttg
agaactctgagggcagtacgggtcctgaggccactgaaactggtgtctggaatccctagt
cttcaggtagttctaaagtccatcatgaaagccatggtgcctctgctgcagattggcatg
ctgctcttcttcgctatcctcatgttcgccatcatcggcctggacttttacatgggcaag
ttccaccggacctgcttcagtactgatacaggtgagcaggcagcagagttcccctgtggt
ttggaggctccagcgaggacctgtgaaaatggaactgtgtgtcaggaatactggatcggc
cccaactacggcattaccaactttgacaacatcctctttgctattctgaccgtcttccag
tgcatcaccatggagggatgggtggacatcctctataacgccaacgatgcctcagggaac
acctggaactggatctacttcatccccctcatcatcatcggatccttcttcatgctcaac
ctggtcctgggagtcctgtctggggagtttgccaaggagcgtgaacgtgtggagaagagg
caggagtttctgaagcttcgcaggcagcagcagatcgagagggagctgactggatacctg
gaatggatatgcaaggcagaggaggtgatgctggcagaggaggacaagcatgctgaagag
atgtctcctctggatggagtgtggtacaagaggaaatacaacaacccagtgttaaaaaga
gccaagaagagcaagaatgacctgatcaacgctgaggagggcgaagaccacttcactgac
atctcatctgttgctcccccaggttctccgttcacccgggccagcctgaagagcagcaag
aatgacagtgcttcctacttccggaggaaagagaagcggctccgcttcaccatcagacgc
ctggtcaaggcccagagcttctactggacagtcctgtgtctggtgggcctcaacacactg
tgtgtggccattgtccattatgaccagcctgagtggctcacctatgcgctgtatttggca
gagtttgtattcctgggcttgtttctgactgagatgtccatgaaaatgtatggactagga
cctaggaactacttccattcctctttcaattgttttgattttggagtgattataggcagt
atttttgaggtgatctgggcagttgtgaaacctggggcttcctacggcatcagcgtcctg
cgagctctccgtctgctcaggattttcaaagtcactaagtactggaactctctgaggaac
ctggtggtctctttactcaactccatgaagtccattatcagcctgctcttcctcctcttc
ctcttcatcgtggtgttcgccctactgggcatgcagctctttgggggaatgtttaatttt
gaagaggagacaccaacaacaaacttcgacacctttccagcagccattctcacagttttc
cagattctgacaggagaggactggaatgcagtgatgtatcatgggatagagtcccagggg
ggcgttcggtggggaatgttctcctctatctacttcatcgttctcaccctgtttggaaac
tacactctgctcaatgtcttcttggccatcgctgttgacaaccttgcaaacgcacaggag
ctcactaaggacgaggaggagcaggaggtggccatcactaagaagatggccctccagaag
gtcaaggaggtgaaggaggtcagccccatttcggcagctaacatctccatcacaggtttt
gtaaagcaaagtcgaggtgcactctcttgcagctcgtccgtctgcagcgttaattcactt
atggagcagcagaagtctctgaagatgatgtcagtgtgggagcagcgcaccactcagctg
aggagacacaacctgcgggccagcagtgaggccctgtacagcgagctggaccctgaggag
aggctacgcatgtcctccgccctgcacatccgccctgacatgaagacccacctggaccgg
cccctggtcgtggagccccacgatggccccggccccatgggctacctcaagccctggacc
cctgagaagacagataaccctggggacccagccggcccccagccacgtaggcgccaccgg
gacagggagagacccatcgacaaggccaatgagattggagattcaggcaaagagggtagg
caccatgtccatcacagtcgcagcaaggaccccaacgggactcggtgcaaggaggggaag
agtgagcggtcgcacagccgagaaggtggcaggaggcaccaccaccagacctcagtggac
gagggaggtagagagggaactgggacgggagagagagagcaccgccaccaccactcccac
agacaggccagagagggtaatggcactgtcaacagcggacgcaaggatgagcgcaggtca
cgccacaaagatggccgctcgggagagatatgctccaggggagagaacagggccaatggg
gagaggaggagacagaagacccacagttacaggggcaagtccacactggagggagaggag
cacagtgagagggagagggggaagggccacagggacagatatgtggaatctgagggcgac
tccatggccactagcacccagcaggaccctggagatcagaggtggggcacagagatacct
gaggactcagacaaccagaggaatgtcagacggacaggacggacggccatccacatcccc
cctgtcaccatcacctccccgcctggggagaccacccttatccccatgaacagtatagac
tgtgagaccatacctatgaacaaggagaagaagaccctggaggcgttgactcggaccgga
cccagacccatcctcccctacagctccatgtttgtgtttggccagaccaacatggtgcgg
cgtctgtgtcattacattgtgagcctgcggtactttgagatgtgtatcctggtagtgata
tctatgagtagcattgcattggctgctgaggaccctgtccaggccaacgctccacgcaac
aatgtgctcaagtatctggactacgtctttacgggagttttcacatttgagatggtgatt
aagatggttgacctgggccttctgctccatcctggttcttacttcagagatctctggaac
attctggacttcattgtggtcagtggagcactggtggcatttgcattttcagggtccaaa
ggaaaggacatcagcaccatcaagtccctcagagttctgcgagtcttacggcccctcaag
accatcaagcgcctgccaaagctgaaggctgtgtttgactgtgtggtcaactccctgaag
aacgtcttcaacattctcattgtctacatgctcttcatgttcatcttcgctgtcatcgct
gtgcaactgttcaaggggaagttcttctactgctccgatgagtccaaggcactggagaag
gactgcagaggtaatttcctggactacgataaggatgaggtggccgcccagcctcgggtg
tggaagaagtatgagttccactatgacaacgtgctgtgggccttcctcactctcttcact
gtgtccaccggagagggctggcccgatgttctgaagcactctgtggacgctacctttgag
gaccagggtcccagtccaggctaccgtatagagatctccatcttctacgtggtctacttc
gtggtctttcccttcttcttcgtcaacatctttgtggccttgatcatcattaccttccag
gagcaaggggacaaggccatgtcagagtgcagcctggagaaaaacgagagggcctgcatt
gactttgccatcaacgccaagccactgacgcgttacatgccagagaacgtgcagtccttc
cagtaccggatgtggaagtttgtggtgtcacccccgtttgagtacgccattatgatcatg
atcgccctgaacaccgtggtgctcatgatgaagttccatggagctccagacttctacgag
gccatgttgaagcacttcaacatcgtcttcactgccctcttctctctggagtgtattctg
aagatcatcgccttcggaccactgaactacctgaaggatgcctggaacgtgtttgacttt
gtgaccgtgctgggaagtataactgacattgtggtcacagaaatcaatacaacggaccgg
cttttgaacctgagttttctgaggctgttcagagcagctcgtctcatcaaactactgagg
caaggctacaccatccgtatcctgctgtggaccttcgtccagtcctttaaggccctgccc
tatgtttgccttctgatagcaatgctgttcttcatctatgccatcatcggtatgcaggtg
ttcggaaacattgagctcaacgaggacacatccatcactcaccacaacaacttccgcact
tttcttcaggctctcatgctactgttcaggagtgccacaggggaggcgtggcatgagatc
atgctgtcgtgtttgagtcacagagcctgtgatgagaggtcaggcaacctggggaaggag
tgtggcagtgactttgcctacttctactttgtgtccttcatcttcctctgctctttcctg
atgcttaatctgtttgtggctgtgatcatggataactttgaatacctgactcgagactct
tctatactggggcctcatcatctggatgagttcatccgtgtttgggctgagtacgaccct
gctgcctgtggccgtatcaagtacctcgatatgtatcagatactcctccacatgtcccca
cccttaggtttgggaaagaaatgtccgccaagagtcgcctacaagcggctagtcaagatg
aacatgcccatcgctgatgacaacacagtccacttcacctctacactcatggccctgatc
cggacggctctggagatcaaactggcctcagggatggttgcccagcgtctctctgatgct
gagctgaagaaagagctctcccaggtttggccaagcctctcacagaaaaccatggatctg
ttggtgacaccacacaaacccaatgagcttactgttgggaaggtgtatgcagccctgatg
atctttgactactacaagcagaaccaagccaagaggctcaaggaacagcaacagcagcag
cagaatgctactggctcccaggggaaggtgggggctctgtttaaaccaatactgcccctg
actcacaagcaggataaagggaaggagaaggccatgaccaacgtggagcctccctgtgag
ctactgcctcagccccagtctcaggccctacctagacccagctccaccctgctcaacaat
ggaggcacactgccaggccatgacggcaccatgaaaggatcatcctcctgggtgtcagag
aagtctagagaggtccacagacccaggaataagacacctgtccaaaggggccagtctgag
gatgtcccaaacctaaccatcccccaggagtcagtggagatgaggaagatggacaccagt
tgcagcacagtgcctgggtctggactggagagccagggaagagctgtgtccatgcctcgc
ctcaacgcagagctgcagaggagcaagtcgcgccactccccggggaccctgctggcacct
gttcctgactgcagcccagtgaaacgctctgcgtccacccacgccccccagcgcccccag
gaggtgaacctgcatgaatacaccctggagaggcccagcacccaagaaaggcctcaccat
caccaccaccaccaccgctgccaccaccaccgagagagggacaagaagcagcggtcactg
gacaggacgccaagcaccattggtgcaccaggagacccggctgcagagccctcacctaga
gacagggtgcaggaccgcggccgctcccatgagaggaagaaccactcgacggcaggggag
aagcagcgctactactcttgtgatcgctacagcagcagggaacactgccacaccaccaag
tctgccaccaccagctgtgccacctccccaagcgaggtgcaggaacccaacatcaacaag
cagggtagtggttcggttaaaggcagcccagtgatgttgacctcaggggctattacacct
agccgtggacgcaggcaactcccacagacccccctgaccccccgccccggggtgacgttc
aagactgcaaactcctcccctgtgcactttgtgtctgcccagtgtggcagcggcctgccc
accctgagtcctggccggctgagccgtgggctgtctgagcacaatgccctgctgcatagt
ggcacctctcacatccccttccccatcacccgcatcagctctgagcccttcctgggctat
agtcacagtgacccccagggccagggtagcccgtactacaacctccgggacgagctgatg
agcccttatgctgccagagcacgctcccctcggactgcacgtcctcaaatgaggccgggg
gccctccacctgcctccaccaccccagaagagacgtgtggtgcccaacgaatgccacttt
acctttggtggtaatggcaacgccagccttggctctgactctggtgccaggccacccagg
tactatcatgaggcagaggaggatgaatggtgctag
DBGET
integrated database retrieval system
