Oncorhynchus mykiss (rainbow trout): 110525610
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Entry
110525610 CDS
T07259
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110525610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110525610
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110525610
Spliceosome [BR:
omy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110525610
Complex C
U5 SnRNP specific factors
110525610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Cache_WalK
Motif
Other DBs
NCBI-GeneID:
110525610
NCBI-ProteinID:
XP_021461563
Ensembl:
ENSOMYG00000035242
UniProt:
A0A060VWQ6
LinkDB
All DBs
Position
6:26365973..26382809
Genome browser
AA seq
2137 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLVGTKMGDKSQRTK
PSMLEERRAKRRKRDEDRHDMNKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDDGSDEESEGEEADLGCTL
TANLGVTGDVMTAKKKELHPRDIDAFWLQRQLSRFYDDAIISQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKEKIIGKMETDPDLSKVL
YQLQETEKEDIIREERSRRERVRKSRVDNDLESMDIDHGESMTPKQLLDLEDLAFTQGSH
FMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVTIEKLPKYAQAGFEGFKTL
NRIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINLDDFKIIYV
APMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQVIVCTPEKWDIITRKGG
ERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDV
ATCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLVHTAA
NVLDKNSLVKYDKRTGAFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVE
LTITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFETLY
QNKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITP
MEALAEQVFVDWHQKFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVV
FVPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKVTDGTLKETLANGVGYLH
EGLSTTERRIVEQLFNSGAVQVVVASRSLCWGTNISAHLVVIMDTQYYNGKIHAYVDYPI
YDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCMDKGVES
IFDIMEMEDEDRSGLLQLSDTQIADVARFCNRYPNIELSYEVAEKENIKSGGPVLVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVLGV
HNYTLYFMSDAYMGCDQEYKFSVDVKEADSDGDSDSD
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcacgtagcttgcagtacgagtacaaagcgaactccaacttggtc
ttgcaagcagaccgttcgctcattgaccgcacaaggcgtgatgagccaacaggagaggtg
ctgtccctggtggggaagttggtgggaaccaagatgggtgacaagtcccagaggaccaaa
ccttcaatgctggaggagagacgggcaaaaaggaggaagagagatgaggacaggcacgac
atgaacaagatgaagggcttcaccctcctgtcagagggcattgatgagatggtgggcatc
gtgtacaagcctaagaccaaggaaaccagggagacctatgaggtccttctcagcttcatc
caggctgcgcttggagatcagccgagagatatcctgtgtggagcggctgacgaggtgctg
gctgtgctgaagaatgacaagatgagggacaaggagagacggcgtgaagtggagcagtta
ctggggcctgcagatgacacacgctaccacgtgttggtcaacctgggcaagaagatcagt
gactacggtggtgacaaagagctccagaacatggatgacaacattgacgaaacatacgga
gtgaatgtccagtttgaatctgatgaggaggagggtgatgaggaccagtttggggaggtg
cgagatgatggctcagatgaagagagtgaaggagaggaagcagacttgggctgcactctg
acagccaaccttggtgtgacaggtgatgtgatgacagccaagaagaaggagctgcaccct
cgtgacatcgatgccttctggctccaacgtcagctcagccgtttctatgacgatgccata
atctctcagaagaaagcagatgaggttctggagatcctcaagacggccagtgatgaccga
gaatgtgagaaccagctggtcttactgttgggattcaacacctttgacttcatcaaaatc
cttcgtcagcatcgtcgcatgatccagtactgtaccatgttggcaagtgctcagagcgaa
gcagagaaggagaagatcataggaaagatggagacagatccagacttgtccaaagttctt
tatcagctgcaggagactgagaaggaggatattattagggaagagcgatctcgcagggag
agagtaaggaagtctcgtgtggacaatgacttggaatctatggacatcgaccatggagag
tctatgacccctaaacagttgctggacctggaggacctggccttcacccagggaagccac
ttcatggccaacaagaggtgccagctgcccgatggctcctttcgcaagcagcgcaaaggc
tacgaggaggtgcacgtccctgcactcaaacccaagcccttcgctgacgatgaggtgctg
gtgaccattgagaagctgcccaagtatgcccaggcaggtttcgaagggttcaaaaccctg
aaccgcattcagagcaagctgttcaagactgctatggagaccgatgagaacctgctggtg
tgtgctcctacgggagcaggtaagaccaacgtggccctcatggctatgctaagagagatc
ggcaagcacatcaacctggacggaaccatcaacttggatgacttcaagatcatctatgtg
gctcctatgcgctcgctggtacaggagatggtgggaagctttagtaagcgtctggccagt
tatggcatcacagtgtctgagctgacaggagaccaccagctgtgtaaagaggagatcaat
gccacccaggtcatcgtctgcaccccagagaaatgggacattatcacacgtaaaggaggc
gagcgcacctacacccagctagtgcgcctcatcatcattgatgagatccatctgctgcat
gatgaccgtgggccagtcctggagtctctggtggccaggaccatccgcaacgtggagctg
acccaggaggacgtgcgtcttctgggtctcagtgccaccctgcccaactacgaggacgtg
gccacctgcctgcgggtagaccccgccaagggactcttctactttgacaacagtttccgt
ccagtgcccctggaacagacatatgtgggcatcactgagaagaaggctatcaagcgcttc
cagatcatgaacgaaattgtctatgagaagatcatggagcatgctgggaagaaccaggtg
ctggtgtttgtccactccaggaaggagacggggaagacggcccgggctatcagggacatg
tgtctggagaaagacaccctggggctgttcctgagggaggggtcagcctcaactgaggtc
ctcaggactgaggcagagcagtgcaagaaccttgagctgaaggacttgctgccctacggt
ttcgccatccatcatgctggtatgaccagagtggaccgtacgttggtggaagatctcttt
gctgatcgccacatccaggtgctggtgtccacagccacattggcctggggtgtgaatctg
cctgcacatactgtcatcatcaaaggcacccaggtgtacagcccagaaaaaggcagatgg
acagagctgggagccctagacattctacagatgcttggtcgagctgggcgtcctcagtac
gacaccaagggagagggcattctgatcacatcccatggggagctgcagtactacctatct
ctgctcaaccagcagctgcccatcgagagccagatggtgtccaagctgccagacatgctc
aatgctgagatagtgctgggcaacgtgcagaatgctaaggacgcagtgaactggctgggc
tacacctacctgtacgtgcgcatgctccgtaaccccaccctgtacggagtctcccatgac
gaccgcagctcggaccccctgctggagcgccgcaggatggacctggtccacactgcagcc
aatgtgctggacaagaacagcctggtcaagtacgacaagcggaccggcgctttccaggtg
acggatctgggtcgcatcgccagccacttctacatcacccatgactccatccagacgtac
aaccagctgctgaagcccaccctcagtgagatcgagcttttccgtgtcttctccctctcc
tctgagttcaggaacatcactgtcagagaggaagagaagctggaactgcaaaagctgctg
gagagagttcccattccagtgaaggagagcattgaagagcccagcgccaagatcaacgtg
ctgctccaggcttatatctctcagctcaaattggagggctttgctctgatggctgacatg
gtctatgtgacgcagagtgctggaagactgatgcgagccatctttgagatcgtcctgagc
aggggatgggcccagctcacagacaagaccatgaacctttgcaagatgattgacaagagg
atgtggcagtccatgtctcctctgcgtcagttcaggaagctcccagaggaagtcatcaag
aagattgaaaagaagaacttccccttcgagcgcctctatgacctcaaccacaatgagatt
ggtgaattgatccgcatgcccaagatggggaagaccatccataagtatgtgcaccagttc
cccaaactggaccttgctgttcacctgcagcccatcacccgctccacactgaaggtggag
ctcaccatcacaccagacttccagtgggatgacaaggtgcatggctcgtcagaggccttc
tggatcctggtggaggatgtagacagtgaggtcatcctacaccacgagtacttcctgctt
aaggccaagtacgcccaggacgagcacctggtcaccttcttcgtgcccgtgttcgagccc
ctgcccccacagtacttcatccgcgtggcctcggaccgctggctgtcctgtgagacccag
ctgccggtgtctttccgccacctgatcctgccagagaagtacccccctcctactgagctg
ctggacttgcagcccctgcctgtgactgccctgcgtaatgccgccttcgagaccctctac
cagaacaagtttcccttcttcaaccccatccagacacaggtgttcaacgctgtgtacaac
agtgatgacaacgtgtttgtgggagcccccaccggcagtgggaagaccatctgtgctgag
tttgccatcctgaggatgctgctgcacaacgcagagggacgttgtgtctacatcacaccc
atggaggccctggctgaacaggtgtttgttgactggcaccagaagttccaggatgctctg
aataagaaggtggtgttgctgacaggagagactagcactgacctgaagctcctggggaag
ggtgacatcattgtcagcaccccggacaaatgggacatcctgtcgcgccgctggaagcag
aggaagaacgtccagaacgtcagcctcttcatcgtggacgagactcacctcattggagga
gagaacgggcctgtgttggaggtgatctgctccaggatgaggtacatctcgtctcagatt
gagcgtcccatccgcatcgtggccctcagctcctccctgtccaacgccaaagacgtggcc
cactggctgggatgcagcaccaccgcaacctttaacttccaccccaacgtcaggcctgtc
cctctggagctgcacatccagggcttcaatgtgagtcacacccagactcgcttgctgtcc
atggccaagccagtgtaccacgccatcatgaagcactccccctctaaaccggctgtggtg
ttcgtcccgtcccgccgacagacccgcctcaccgccatcgacatcctcaccttctgtgct
gctgatgtggtccctcagaggttcctgcactgcactgagaaggacctggctcccttcctg
gagaaggtgacagacggcaccctaaaggagacactggccaatggggtgggctacctgcac
gagggcctgtccactacagaacgcaggattgtggagcagctctttaactcgggtgcagtc
caggttgtagtggcctcacgctccctctgctggggcacaaacatatctgctcacctggtt
gttatcatggacacccagtactacaatggcaaaatacatgcctatgtggactaccctatc
tacgatgtgctccagatggtgggcaaggccaatcggcccctgcaggacgatgagggacgc
tgtgtcatcatgtgccagggttccaaaaaggatttcttcaagaagttcctgtatgagccc
ctgccggtggaatctcacctggaccactgcatgcacgaccacttcaacgctgagatcgtc
accaagacggtggagaacaaacaggacgcagtggactacctgacctggaccttcctgtac
cgccggatgacccagaaccccaactactacaacctgcaaggcatgtctcaccgtcatctg
tccgaccacctgtcagagctggtggagaacaccctgcatgacctggagcagtccaagtgc
atcagcatcgaggatgagatggacgtggcacctcttaacttgggcatgattgctgcctac
tactatatcaactacaccactatcgagttgttcagtatgtccctgaacgccaagaccaag
atccgtggattgattgagataatttccaatgctgctgagtacaagaacatccccatcaga
caccatgaggacaacctgctcagacagctggcccagaaggtgccccacaaactgaacaac
cccaagttcaacgacccccatgtgaagaccaacctgctgctgcaggctcacttgtccagg
atgcagttgagcgctgagctccagtcagacacagaggagatcctcagcaaggctgtgcgt
ctgatccaggcctgtgtagatgtgctgtccagtaatggctggctgagccctgcgctggct
gctatggagctagctcagatggtcacccaggccatgtggtctaaggactcctacctcaaa
cagctgccctacttcacctctgagcacatcaaacgctgcatggacaagggtgtggagagt
atctttgacatcatggagatggaggatgaggatcgtagtgggctgctgcagctctcagac
acccagatagctgacgtggctcgcttctgtaaccgctaccctaacattgaactgtcctat
gaggtggcagagaaggagaacatcaagagtggaggtccagtgctggttttggtccagttg
gagagagaagaagaggtgactgggcctgttattgccccactcttcccccagaaacgtgag
gagggctggtgggtggtgattggagaccccaagtccaatagcctgatctccataaagagg
ctgaccctgcagcagaaggccaaggtgaagctggactttgttgcaccagtgctgggcgtt
cacaactacacactgtacttcatgagtgatgcctacatgggctgtgatcaggagtataag
ttcagcgtggatgtgaaggaggcagacagcgatggagacagtgattcagactaa
DBGET
integrated database retrieval system
