Oncorhynchus mykiss (rainbow trout): 110525817
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Entry
110525817 CDS
T07259
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04142
Lysosome
omy04144
Endocytosis
omy05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
110525817
04142 Lysosome
110525817
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
110525817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110525817
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110525817
Membrane trafficking [BR:
omy04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
110525817
Exosome [BR:
omy04147
]
Exosomal proteins
Proteins found in most exosomes
110525817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
IFS
Gp18_dom_I
capSnatchArena
Motif
Other DBs
NCBI-GeneID:
110525817
NCBI-ProteinID:
XP_021461930
Ensembl:
ENSOMYG00000046879
UniProt:
A0A8C7V1X6
LinkDB
All DBs
Position
6:33465992..33508271
Genome browser
AA seq
1683 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIIDMADPNN
PSRRPISADSAIMNPASKVIALKAAKCLQIFNIEMKSKMKAHTMTEEVMFWKWISVNTVA
LVTEAAVYHWSMEGDSQPIKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFGEFKVEGNTKASTLFCFAVRSQAGGKLHIIEVGQPATGN
QPFTKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHLYDLESGVCIYMNRISA
ETIFVTAPHELTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLGLRMAVRSNLAGA
EELFARKFNTLFAQGSYSEAAKVAASTPKGILRTAETIRKFQSVPAQPGQASPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECCEELGDLVKAVDPTLALSVYL
RANVPSKVIQCFAETGQFQKIVLYAKKVGYSPDWVFLLRNVMRVSPEQGLQFSQMLVADE
EPLANINQIVDVFMEGSLIQQCTSFLLDALKNNQPAEGHLQTRLLEMNLIHAPQVADAIL
GNQMFSHYDRAHIAQLCEKAGLQQRALEHYTDLFDIKRAVVHTHLLNPEWLVNFFGALSV
EDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTNTLVELFESFKSYEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPDRVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLSWLESRIHEGCEEPATHNALAKIYIDSNNTPERFLKENTFY
DSAVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWANVL
EENNPYRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYVNRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AIQVLIEQISNLDRAYEFAERCNEAAVWSQLARAQLQRDLVKEAIDSYIKADDPSAYMEV
VSAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTVRLAELEEFVSGPNNAHIQQ
VGDRCYEEGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCCAC
VDGEEFRLAQICGLHIVIHADELEELISYYQDRGYYEELIGLLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVLTMMS
HPTDAWKEVQFKDIIAKVANVELYYKSLSFYLDNKPLLTNDLLTILSPRLDHSRTVSYFT
KVNQLKLVKPYLRSVQSHNNKGVNEALNNLLTEEEDYQGLRASIDAYDNFDTIGLAQRLE
KHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDGMLYAAESKDAELAETLLQWFLEE
GRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDEVEEKVTVD
KLEESESQRKTEEEVTEPTPIVFGQQLMLTAGSAPVAPQPGYPGGYGYAAPGYSPQPPYN
YNM
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atggcccagatactgccgatacgatttcaggaacatctgcagctgcagaacctgggggtg
aacccggctaacattggtttcagctacctgaccatggagtctgacaagttcatctgcatc
cgggagaaggtgggcgagcagaaccaggtggtgatcatagacatggctgaccccaataac
cccagcagacgtcctatctctgctgacagtgccatcatgaaccctgccagcaaggtcatc
gccctcaaagctgctaagtgcctgcagatcttcaacattgagatgaagagtaagatgaag
gctcacaccatgactgaggaagtcatgttctggaagtggatctctgtcaacaccgtcgcc
ttggtgactgaagcggctgtctaccattggagcatggagggggactcgcagcccatcaaa
gtgtttgatcggcacgcaagtctggccggatgccagatcataaactacagaacagacgaa
cagcagaagtggctcctccttatagggatctcggcacagcaaaaccgtgtggtgggggcc
atgcagctgtactctgtggacaggaaggtgtcccagcccatcgaaggccatgctgcagcc
ttcggagagtttaaggtggagggcaacaccaaagcctccactctgttctgcttcgctgtg
cgcagccaggctgggggcaagctgcacatcatagaggtgggtcagccggctacagggaac
cagccgtttactaagaaggctgttgatgtgttcttcccacctgaggctcagacagacttc
cccgttgccatgcagattggcaccaagcacggtgtgatctacctgatcacgaagtatggc
tacatccacctgtacgacctggagtcaggagtgtgtatctacatgaaccgcatcagcgcc
gagaccatcttcgtcaccgccccccacgaactcacctccggcatcatcggggttaacaag
aagggacaggtgttgtcagtgtgtgtggaggaggaaaacatagtgaactatgccaccaac
gtgctgcagaacccagacctgggcctgaggatggccgtgcgttctaacctggccggggct
gaggagctgtttgccaggaagttcaacacactgttcgcccagggctcctactccgaggct
gccaaggtggccgcatccacacccaagggtatcctgcgcacagcggagaccatccgtaag
ttccagagcgtgccagcccagccgggccaggcctctcctctgctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggagctgtgccggcccgtgcta
cagcaaggacgcaagcagctgctggagaagtggctgaaagaggacaagctggagtgttgt
gaggagcttggtgacctggttaaggcagtagatcctacgctagccctcagtgtctacctc
agagccaacgtacccagcaaggtgatccagtgctttgctgagaccggacagttccagaag
atagtgctctacgccaaaaaggtgggctactctccagactgggtgtttctgttgaggaat
gtgatgcgggtcagtccagaacagggtctacagttctctcagatgctggtggcagatgag
gagcccctggccaacatcaaccagatagtggatgtgttcatggagggaagtctgatccag
cagtgtacctcattcctattggacgctctgaagaacaatcagccagccgagggacaccta
cagacacgcctactggagatgaacctcatccacgccccccaggtagccgacgcgatcctt
ggcaaccagatgtttagtcactatgaccgagcccacatcgcccagctgtgtgagaaggct
ggactgcaacagagggctctagagcactacactgacctgttcgacatcaaacgggctgtc
gtacacacacacctgctcaaccctgagtggctggtgaatttctttggcgccctgtcagta
gaggactcagtagagtgtcttcgggccatgttatcagccaacatcagacagaaccttcag
ctgtgtgtccaggtggcatctaaataccacgagcagctgggaacaaacaccctggtggag
ctctttgagtccttcaagagctacgagggtctgttctacttcctgggctccatagtgaac
ttcagccaggaccctgacgtccattttaaatacatccaggcggcctgtaagacaggccag
atcaaggaagtggagcgcatctgtagagagagcaactgttacgacccggacagggtcaag
aacttcctcaaggaggctaaattgacagaccagctgccgttgatcatagtgtgtgaccgc
tttgactttgtccatgacctggtgctctatctctaccgcaacactctgcagaagtacata
gagatttacgttcagaaggtgaaccccagccgtctgcctgtggtgataggaggtctgttg
gatgtagactgtgctgaagacgtcattaagaacctgatcatggtggtgagaggacagttc
tccactgatgagctggtagcagaggtggagaagaggaacagactgaagctgttgttgtcg
tggcttgagtctcgtatccacgagggctgtgaagagccggctacccacaatgccttggct
aagatctacattgacagtaacaacaccccggagcgcttcttgaaggagaacaccttctac
gacagtgctgtagtggggaagtattgtgagaagagagacccccacctcgcctgtgtcgcc
tatgagaggggccagtgtgacctggaccttatcaaggtgtgcaatgagaactccctgttc
aagagtgaggctcgctacctggtccgacggaaagacccagaactatgggccaacgttctt
gaggagaataacccttatagacgccaactcatagaccaggtggtgcagaccgctctgtca
gagacccaggacccagaggaggtgtctgtgacggtcaaggccttcatgacagctgacctg
cccaatgagctcattgaactactggagaagattgtactggacaactcagtcttcagcgag
caccgaaacctccagaacctgttgatcctgacggccatcaaggcagaccgtacccgtgtg
atggagtacgtcaaccgcctggacaactacgacgcccccgacatcgctaacatcgccatc
agcaacgagctcttcgaggaggccttcgccatcttcaagaagtttgacgtcaacacctcc
gccattcaggtcctgatcgagcaaatcagtaacctggacagagcctatgagtttgcagag
cgttgtaatgaggctgcggtatggagtcaactggccagagcccagctccagagagacctg
gttaaagaggccatcgattcctacatcaaagccgacgacccgtcagcctacatggaggtg
gtcagcgctgccagcaagaacaataactgggaggatctggtgaagttccttcagatggct
cgtaagaaggccagagagtcgtatgtagagacagagctcatctttgctctggctaaaact
gtcagactggccgaactagaggaatttgtcagcggccctaacaacgcccatatacaacag
gtaggagataggtgttatgaagaagggatgtatgatgctgccaagctgctgtacaataac
gtgtccaactttgcccgcctggcatccacgctggtacacctaggagagtaccaagctgct
gtggacagcgccaggaaagccaacagcacacgcacctggaaggaggtgtgttgtgcgtgt
gtggatggggaagagtttcgattggctcagatctgtggtctacacattgttatccacgct
gatgaactggaggagctcatcagctactaccaggaccggggttactatgaggagctgata
ggcctgttggaggccgcgttgggtttggagcgcgctcacatgggcatgttcacagagctg
gccatcctctactccaaatttaaaccccagaagatgagagaacacctggaactcttctgg
tcccgcgtcaacatccctaaggtgctgcgagcggcggagcagtcccatctgtgggcggag
ttagtgtttctgtatgataaatacgaggaatatgacaacgctgtcctcacgatgatgtca
caccctaccgacgcttggaaggaggtgcagttcaaggacatcattgccaaggtggccaat
gtggagctgtactacaaatccctttccttttacctggacaacaaacctctgctgacgaac
gaccttctgaccatactgtcaccacggttagaccacagccgcacggtcagctacttcacc
aaggttaaccagttgaagttggtaaagccttacctgaggtcagttcagagtcataacaac
aagggagtcaacgaggccctcaataacctgctgacagaggaggaggactaccagggtctg
agggcgtctatcgatgcatatgataactttgacaccattggtttggcccagagactggag
aagcatgagctgattgagttcagacgcatcgcagcatacctctacaaaggcaacaaccgc
tggagacagagcgtggaactctgcaagaaggacaaattatacaaggatggaatgctgtac
gctgctgagtctaaggatgctgagttggctgagaccctgttgcagtggttcctggaggag
ggcaggaaggagtgtttcgctgcctgtctgtttgcctcctatgacctgttgcaccctgac
gtggtgctggagctggcctggagacacaacataatggactttgccatgccatacttcatc
caagtcatgagggagtacctcaccaaggttgatgaggttgaggagaaggtgacggtggat
aaactggaggagtcagaaagccaaaggaagactgaggaagaagtcacagaacccaccccc
atagttttcggtcagcagctgatgttgacggcaggctcggctccagtggcaccccagcct
ggatacccaggaggctacggatacgctgccccaggctactccccccagcccccctacaac
tacaacatgtag
DBGET
integrated database retrieval system
