Oncorhynchus mykiss (rainbow trout): 110526164
Help
Entry
110526164 CDS
T07259
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X2
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
omy04812
]
110526164
Cytoskeleton proteins [BR:
omy04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
110526164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
eIF2A
Beta-prop_RIG_1st
WDR54
Beta-prop_DCAF12
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
PROPPIN
WD_LRWD1
Beta-prop_LRRK2
Beta-prop_NUP159_NUP214
Beta-prop_IP5PC_F
RMC1_N
Beta-prop_IFT122_2nd
Ge1_WD40
Beta-prop_WDR11_1st
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
110526164
NCBI-ProteinID:
XP_021462509
Ensembl:
ENSOMYG00000012883
LinkDB
All DBs
Position
6:complement(55449107..55458630)
Genome browser
AA seq
700 aa
AA seq
DB search
MAVANTTKTSWRLQEIVAHSSNVVCLALGKNSGRLLATGGEDCRVNIWAVSKPNCIMSLT
GHNNPVECVKFNNSEEQVVAGSQSGSLRVWDLEAAKILRTLMGHKANICSLDFHPFGEYL
ASGSMDTNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTIKLWDLTAGK
MITEFTAHTGAINIIQFHPNEYLLASGSSDRTIKLWDLEKFKMIGSSEGEMGPVRCLAFN
LDGCCLYSGAVDSLRVYGWEPNRCFDVVPVGWGKVADLAICNHQLIGVSYNLTNVSSYVV
DLTRVKKSGSVIQGVIQDDQPLTEPSPKGSTLRRNYDRPLTTCSTQRVKQSSESDRRSPE
GERRSPSSEDEKESSAEIRNPEDYKEIFQPKSAISRTPPKSEPFPAPLEDESFVVRANQG
LVEFMTPMTDRQQPGLLLNLPVASSTPVLRVEPTMVATAPRPIPVVTTRPPTSNHPPAPH
PAPPLVVAMAKAKPQPSVILSTRNEPIGLNVGDFLPPARNNRPSVLGDDEALAQIRKGHD
TMCVMLTSRHKNLDTIRAVWGSGDVKTSLDSAVSMKDLSIVVDILNIVNLKPSLWKLDLC
TSILPQIEELLQSKYESYVQTGCTSLKLILKRFWPLISDTLTAPPSVGVDITREERHQKC
KACYKQLKNLSNVVKNKADQVGRHGSAFKELQLLMAPLDY
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggccaacaccaccaaaacatcatggcgattacaggagattgtagcccactcc
agtaatgtggtgtgtctggccctggggaagaactcaggccgtctgctagccactggggga
gaggactgccgagtcaacatctgggcagtcagcaaacccaactgcatcatgagtctgaca
ggacataataacccagtggagtgtgtaaagtttaataactctgaggagcaggtggtggct
ggctcacagtccggatcactgcgcgtatgggacctggaggctgcaaagatcctaagaact
ctaatgggacacaaggccaatatctgcagcttggacttccacccatttggggaatacctg
gcatctggttccatggacaccaacatcaagctgtgggatgtacggagaaagggctgtgtg
ttcaggtacaagggtcacactcaggcagtgaggtgcctggccttcagtccagatgggaaa
tggttggcctctgctagtgatgacagcaccatcaagctgtgggacctgactgcagggaag
atgatcacagagtttacagcacacacgggagccatcaacatcatccagttccaccccaac
gagtatctgctagcgtcaggcagctctgaccggaccatcaaactgtgggatctggaaaag
ttcaagatgattggctcttcagagggagagatgggaccagtcaggtgtctggcctttaac
ctggatggctgctgtctgtatagtggagctgtggactctctccgtgtgtatggctgggag
cccaaccgctgctttgatgtggtgccagtgggctggggcaaggtggcagacctggctatc
tgcaaccaccagctgattggcgtgtcgtacaatctgactaatgtttcatcctacgtggtg
gatttgacgcgggtgaagaagtctggctctgtgatccaaggcgtaatccaggacgaccag
ccactcacagagccctccccgaaaggatccacgctgcgacgcaactacgaccgacccctg
accacctgcagcacacagagggtaaagcagagttctgagtcagaccgccgcagccccgag
ggggagaggaggagccccagtagcgaggacgagaaggagtcctccgccgagatccgtaac
cccgaggactacaaagagatcttccagccaaagagcgccatctctcgcacccccccaaag
agtgagcccttccctgcccccttggaagatgagagttttgtggtgagggctaaccagggg
ctggtggagttcatgactcctatgactgacagacagcagcccggcctgttgttaaacctt
cctgtggcatcgtccactccggtcctgagggtggagcctaccatggtcgccacggcgccc
cgtcccatccctgtggtaaccacacgacctccgacctctaaccacccccccgcaccccac
ccagcccccccactggtcgttgctatggcgaaggccaaaccccagcccagcgtcatcctc
tccaccaggaatgaaccaataggactcaacgtgggagatttcctgcctcctgctcgcaac
aaccggcccagtgtgctgggtgatgacgaggctctggcccagatcagaaagggccatgac
accatgtgtgtgatgctcaccagccgacacaagaacctggacaccatcagagctgtgtgg
ggcagcggggacgttaagacctccttggactcggccgtctcgatgaaggatctctctatc
gtcgtggacatcctcaacatcgttaacctcaaaccgtctctatggaaactggacctgtgt
acctctatcctgccccagattgaagagctgctgcaaagcaagtatgagagttacgtgcag
acgggttgcacctctctgaagctgatcctgaagcgtttctggcctctcatctcagacacg
ctgacagcgcctccctctgttggagtggatataacacgggaggaacgccaccagaagtgc
aaggcatgctacaagcagctgaagaacctcagcaacgtggtgaagaacaaggccgaccag
gtgggacgccacggcagcgccttcaaagagctgcagctgctcatggccccactggactac
tga
DBGET
integrated database retrieval system
