Oncorhynchus mykiss (rainbow trout): 110526208
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Entry
110526208 CDS
T07259
Symbol
atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04136
Autophagy - other
omy04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110526208 (atg13)
04136 Autophagy - other
110526208 (atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110526208 (atg13)
03029 Mitochondrial biogenesis [BR:
omy03029
]
110526208 (atg13)
Membrane trafficking [BR:
omy04131
]
Autophagy
Autophagosome formation proteins
ULK complex
110526208 (atg13)
Atg1 complex
110526208 (atg13)
Mitochondrial biogenesis [BR:
omy03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
110526208 (atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
110526208
NCBI-ProteinID:
XP_021462653
Ensembl:
ENSOMYG00000016127
LinkDB
All DBs
Position
6:57558525..57568473
Genome browser
AA seq
549 aa
AA seq
DB search
MMDSDLSPQDKKDLDKFIKFFALKTVQVIVQARLGEKVCTRSLSSPTGSDWFNLAIKDIP
EVTHEAKKALSGQLPGIGRSMCVEISLKTSEGDSMELETWCLEMNEKCDKDIKVSYTVYN
RLSLLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGEVQLTGLGEGFQTVRVGVVGTP
IGTITLSCAYRTNLAFMSTRQFERTAPIMGIIIDHFVERPFGNMGHMRPCNYRAPGEDEG
AYNGVEDSQEVCTTSFSTSPPSQCVFTVSKAHLKTPKPAVMDTLKVPMMGLAFSHQLYCS
RLSYQPPVLVGAADFCHPSTLNAANPHQVTTQMGIPGKEGGVPQQVPVQPCHGAQAEHGR
VSSCPPADHVPATPSSSGEGAETLSRSIEVKGVSPCDVLETTFTRKVGAFVNKPGTQVTT
ASLDLPFAAFAPRAYDLEENDPMVQPPESPATSSPLQGSLHSQGSGESGGPAQDDFVMVD
FKPAFSKDDLLPMDLGTFYREFQNPPQLASLTIDVSSQSMAEDLDSLPEKLAVYEKNIDE
FDAFVDTLQ
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgatggacagtgatctaagtcctcaggataaaaaagacttggacaagttcataaagttt
ttcgctttgaagacagtgcaggtgatagtccaagcgcgacttggggaaaaagtatgcaca
cgctccttgtcttcacctactggctctgattggttcaatctggcaatcaaagatatccca
gaagttacacacgaggcaaagaaagctctgtccgggcagcttcctggcatcggacgatcc
atgtgtgttgagatctccctcaaaacctcagagggagactcaatggaattggagacatgg
tgtcttgaaatgaacgagaagtgtgacaaagatattaaggtgtcctacactgtctacaac
cgcctgtcattactgctcaagtcactgctggccattacaagggtaaccccagcctacaaa
ctctcacgaaagcaaggccatgactatgtcatactgtacaggatatattttggagaggtt
caactcacaggattgggagaagggttccagacagtgcgtgtaggagttgtgggaactccc
attggaacaatcaccttgtcttgtgcttacaggacaaacctggccttcatgtccaccagg
cagtttgagaggacggctccgattatgggcataattattgaccacttcgttgagcgcccc
tttggcaacatgggacacatgcgtccatgtaactacagagcacccggggaagatgaagga
gcatacaatggggtggaagattctcaggaagtgtgcaccacgtccttctccacttctcca
ccctcacaatgtgtgttcactgtaagtaaggcacatttaaagacccctaaacctgcagtg
atggacactctgaaagtccccatgatgggcctggccttctcacaccaactctactgctct
cgtctttcttatcagcctcctgttcttgtcggagctgctgacttctgccacccttccacc
ttaaacgctgccaacccacaccaggtaaccacccagatgggaatcccagggaaggagggg
ggcgtaccccagcaggtgcctgtgcagccttgtcatggtgcccaggcagagcatggacga
gtgtcctcatgcccccccgctgatcatgttcccgccactccctccagcagtggcgagggt
gcagagaccttgtcgaggagcattgaggtgaagggtgtctctccctgtgatgtactggag
accaccttcaccaggaaagtgggtgcctttgtcaacaagccaggcacacaggtaaccaca
gcaagcctggacttaccatttgcagcgtttgctcccagagcctatgacctcgaggaaaat
gaccctatggttcagccgccggagtccccagccacgtcctctcctctgcagggcagttta
cactcccagggctctggtgagagtggtggcccggcacaggacgactttgttatggtggac
tttaagcctgcgttctctaaggatgacctgcttcccatggaccttggcacattctacaga
gagttccagaaccccccacagctcgccagcctcacaattgatgtcagttctcagtccatg
gcagaagacctggactctcttcccgaaaaacttgcagtatacgagaagaacattgatgaa
tttgatgcatttgtggacacattgcagtag
DBGET
integrated database retrieval system
