Oncorhynchus mykiss (rainbow trout): 110526549
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Entry
110526549 CDS
T07259
Symbol
copb1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110526549 (copb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110526549 (copb1)
Membrane trafficking [BR:
omy04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
110526549 (copb1)
Exosome [BR:
omy04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
110526549 (copb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatamer_beta_C
Coatomer_b_Cpla
HEAT_2
Cnd1
HEAT
HEAT_EZ
Arm
MMS19_N
Motif
Other DBs
NCBI-GeneID:
110526549
NCBI-ProteinID:
XP_021463274
Ensembl:
ENSOMYG00000028621
UniProt:
A0A8C7SAA5
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All DBs
Position
6:73733797..73741617
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVPNDSEPPSEVSLKADLEKGEIKAKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKESELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFENLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVHTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKEHPTHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVTEHEDTDKFRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDTNEAAAADV
LEFVREAIQRFDNLRPLIIEKMLEVFHAIRTVKIYRGALWILGEYCSTKEDIQSVMTEVR
RSLGEIPIVENEIKKEAGEGKPEEEVSAAPAAKLVTEMGTYVTQSALSSSRPSKKEEDRP
PLRGFLMDGDFYVAASLATTLTKVALRYVTIVQDKKRQNSFVAESMLIMATILHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRKSLSHMLTVRLEEEKLSQKKESEK
RNVLVQADDPISFMQLTAKNETSSKEDQFQLSLLAAMGTTLKKEANDPMASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTNDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNIADLNEYLHHILSSTNMKCLTPEKALSGFCGFMAANLYARSI
FGEDALANVSIEKPIHLGPDAPVNGHIRIRAKSQGMALSLGDKINLSQKKTSV
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacagccgcagagaatgtttgttacactttgatcaatgttccaaatgactccgaacct
ccatcggaagtcagtctcaaagcagacttggaaaaaggagagatcaaggcaaagacagag
gccctgaagaaggtaatcatcatgatactgaatggagagaagctgccaggcctactgatg
accatcatccgatttgtcctcccacttcaagaccacaccattaaaaagcttctgctagtc
ttctgggagattgtccccaaaacgactccagatggcaagctgcttcaggagatgatcctt
gtctgtgacgcctacagaaaggacttgcagcaccccaacgagttcatccgtggatccacc
ctgcgctttctgtgcaagttgaaggagtctgagctgctggagcccctcatgccagccatc
cgcgcctgcctggagcaccgccacagctacgttcgccgcaatgctgtactggccatctac
accatctacaggaactttgaaaatcttatcccagatgcccctgagttgatccatgatttt
cttgtgaatgaaaaagatgccagctgcaagagaaatgctttcatgatgctcattcatgca
gaccaggacagagctctggattacctcagcacctgcattgatcaagtgcatacatttgga
gatattctccagttggtcattgtggagctgatttacaaggtgtgccacgctaacccgtct
gagcgtgcccgcttcatccgctgcatctacaacctgttgcagtcctccagcccagctgtc
aagtacgaggcagctggcactcttgtcacgctgtccagcgcacccactgccatcaaggct
gctgcccagtgctacatcgacctgatcatcaaggagagtgacaacaacgtgaagctgatc
gtcctggatcgtctgatagagctgaaggagcatcccactcatgaacgtgttctccaggac
ctggtgatggacattctgcgtgttttgagcacgcctgacctcgaggtccggaagaagacc
ctgcagctggccttggacctagtctcatcccggaacgtagaggagttggtgatagttctg
aagaaggaggtgattaagaccaacaatgtgacggagcatgaggacactgataaattcagg
cagctgctggtgcgcaccctccactcatgcagtgtacgcttccctgacatggcggccaat
gtcattcctgtgctgatggagttcctgagtgacactaatgaggcagctgcggctgatgtg
ctggagtttgtgagggaggccattcagaggttcgacaacctgaggcccctcatcatcgag
aagatgctggaagtcttccacgccatcaggactgtcaagatctacagaggagcgctttgg
atcctgggagaatactgtagcactaaagaggatattcagagtgtgatgacagaagtgcgc
aggtcgcttggagagattcccatagtagagaacgagatcaagaaagaggctggggagggg
aagccggaagaagaggtgagcgcagcgccagcagccaaactggtgaccgagatgggcacc
tacgtcacacagagcgccctcagctcctcccgcccctcaaagaaggaagaggacaggcct
cctctcaggggcttcttgatggacggagacttctatgtggcagcctctttagccacaacc
ctgaccaaagtggccctgcgatatgtcaccatagttcaagacaaaaagagacagaattcc
tttgtggctgagtctatgctgatcatggccaccatcctccacttgggcaagtcctctctg
cccaagaagcccatcacagacgacgatgtggaccgcatctcgctgtgcctcaaggtgctg
tccgagtgttcgcccctcatgaacgacatctttaacaaggagtgccgcaagtccctgtct
cacatgctcactgtcaggctggaggaggagaagctatctcagaagaaagagtcagagaag
cggaacgtgctggtgcaggcagacgaccccatttcctttatgcaactgacggccaagaac
gagacgtcctccaaggaggaccagttccagctcagtttactggctgccatgggaaccact
cttaaaaaggaggctaacgaccccatggcctccaaactcaacaaggttacccagctgact
ggtttctcagacccagtctatgctgaggcctatgtccatgtcaaccagtatgacattgtg
ctggacgtgctggtcgtcaaccaaaccaacgacacccttcagaattgcaccctggagctg
gcgacattgggtgacctcaagctggttgagaagccttctcctctcactctggcaccccat
gactttgccaacatcaaggctaacgtcaaagtggcgtccacagagaatggcatcatattt
ggcaacatagtgtatgacgtatcaggagctgccagcgacaggaactgcgtggtcctcagt
gacatccacattgacatcatggactacatccagccagcctcgtgcacagatgcagagttc
agacagatgtgggccgagtttgagtgggagaataaggtgacagtgaacaccaacattgca
gacctgaacgagtacctccaccacatcctcagctccaccaacatgaagtgcctgacccca
gagaaggcactttctggcttctgtggcttcatggctgccaacctgtatgcccgctccatc
ttcggtgaagacgccctggccaacgtcagcattgagaagcccatccacctgggtcctgat
gcccctgtcaacggacacatccgcatccgggccaagagccagggtatggcattgagtctg
ggtgacaagatcaacctttcccagaaaaaaacatctgtataa
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