Oncorhynchus mykiss (rainbow trout): 110526604
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Entry
110526604 CDS
T07259
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X2
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110526604 (chd9)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110526604 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
110526604
NCBI-ProteinID:
XP_021463380
Ensembl:
ENSOMYG00000042403
UniProt:
A0A8C7UKA1
LinkDB
All DBs
Position
6:complement(76591723..76723031)
Genome browser
AA seq
3083 aa
AA seq
DB search
MTDPIMDFFDDPNLFVGGLDGLAEEGFPPGPSLVDELNLSAGFEPLQVEPMGAGKHPGMI
PTSTQQSMAYGQQMGSFPGMKAQNSMGQPFASSEGVGGGGMIAAQHTHFHGRSIGQAPQS
NALFSNSSPMWGNQDQNGNLYHSVPQQQQQLHQQQQQQLHNQQHHLRQQQPQQQHHPCQQ
QLQQQQVQQLQQQHQLLNQRQQQHLHQQVVNPQSLPQQHHSFPFHQANQQPASHNQQLTT
GGTQFHSRAVPNSGALATANVETPNASLAGTPPQQGGYQLVQGAFPGVGPEDSSMSFSMQ
TCSPMAHTLSSCSVSSTTTYPPSQYSFPGQGQPGISSLSQPLSLAPVSMITTTTPLPSSV
PELSLVGAGCAFSSAPGMTQHHQPKQVPVSQAEDECPFRALRCSRQTLGNYDSSEMFGQA
MSCYPSAVSQLIPDQHQPQNCGSNLEVTRPPASTTTTNGYVSLEVSLAGLQGEVEAQGGG
FEGLEAPDLLADELLPQLEAALSQHDHHDSNCSWTNGGDGERNGKGEEEEEMKEEERISI
SMDYKIQPPKNKNANGPNSHTAARVLSPPMKSSSSSSSSSSYSLSLEKRAQRRLVKEQRE
QQQQQLMEEAGEDKQQKANRIIHEAIAKARERGEKNIPRVMSPESFPSGSSSAHRRERER
DRDRDRERDRGNKTRTKASKKARIVPSSKPKQKAKIGKIVIKFGGMKKKRETESSEEGSD
EERPPRRSFKDDDSTRRSNRQVKRKKYAEEGEARVSDEEVKVMVKTKKTSTAAARKEPAQ
QLFVENPSEEDAAVVDKIMSSRIVKNEVAPGVIVEVEEFFVKYKNYSYLHCEWAVEQQLE
KDKRIQQKIKRFKIKQAQRAHFFADMEEDPFNPDYVEVDRVLEVSYCEDKDTGEVVYYLV
KWCSLPYEDSTWELKGDVDQSKIEEFELLQAARPDSRRMERPPASLWKKRDQSREYRNSN
VLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIWRVGIRGPFLIIAPLS
TIANWEREFRTWTHLNVIVYHGSMVSRQMLQQYEMYSRDTQGRVVRGAYKFHALITTFEM
ILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKALLTGTPLQNTVEELFS
LLHFLEPQSFPSENTFMLEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETII
EVELTNIQKKYYRAILEKNFSFLSKGVGQANVPNLVNTMMELRKCCNHPYLIKGAEEKIL
EDFREVYSPVAFDFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYL
IQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS
DWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRE
NSVPGGGPTQQQLSKKEIEDLLRKGAYGALMDDEDEGAKFCEEDIDQILQRRTKTITIES
EGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKAEIDMDTANGRNSLVIDTPRVRKQT
RPFSATKDELAELSEGESDNEDKPKLRRPHDRLNSYGRTECFRVEKNLLVYGWGRWKDIL
LHGRFKKQLTERDVESICRALLAYCLVHYRGDDKIKSFMWDLIAPSEDGQTKELQNHLGL
STPVPRGRKGKKMKTQSSTFDIQKAEWIRKHNPEHMLQDEGYKKHLKHHCNKVLLRVRML
YYLKQEVMGSQSQKILDGVDSSEIKIWVPEPDSSELPALWWDNISDKCLLLGVYKHGYEK
YNTVRADPALCFLERVGRPDEKAIAAEQRANDFMDGDVDDPEYKPAPALLKDDMEDDASS
PGDLVVSDNPGEGAPVMMEGLGGGGGGDAAYWPSSSVLTARLRRLITASQRYTKSRQILH
IHQTQHTTQVTPSLCPLPPTLNDTINPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDP
DLGRFDWTKFRAMARLHKKTDESLQKYLWAFTAMCRRVCRLPPREGDTAVDPSLSIQPIT
EERASRTLYRVELLRQVREQVLRHPLLYERLPLCQLGSDLPVWWETGTHDRDLLIGATKH
GVSRTDYHILRDPELCFMAAQRNYSQNKGVQQPSQTPTPLLNPQYQASRDPALAESPVPT
PAQMEREDIPGAVPKEEPLSEGEERMERGGQVEGERWSPQPAPLTPTGIEEKPDLGVVKG
ENESHMVAARTKPLTPNSAARKEKKANKRSRREARRAASAASDSDSDGSSSSSSSRSSSS
SSSSSSSSSRSGSSSSSSSSCSSGSSSSSSSSSSSSVGSESEGEEGKIKVPTVAIVKGFD
EDSVASLSTTQDEMQDSHVTENGSNNSHHHPFQGGYMLAASYWPKDRVMINRLDSICQAV
LKGKWPGARRSYEAGGAVASFYTTKLLDNAAAANNSSNLCSASALASEDPSASPQGSKVK
KHVAGEKEFSVKMNEQEGGLKLTFQKQGPGQPLKRPLEPEEGPLSQQQYLTRLHELQSAS
DTSLADFTKPQAASFPQASTGLAGQMKLNGGMDGQPVVKRRRGRRKNVEGMDLLFMNRKR
GPAVPESVPPAWGGMSQAGTGLSIASGQVNPLGAQGPMDTESRVSVINLKDGTRLAGDDA
PRRRELELWLKEHPGFVADTGAFIPGVNKRQLEQFQQDGRPKQKRHRCRNPNKIDVNSLT
GEERVQIINRRNARKVGGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESMFDR
ILTGPIVPEEVSRRGRRPKSALAKAAATANQGAPSLGLNPLLANGLLSGIDLSSLQAFQQ
NLQSLQSLQLTAGLMGLPTDANNLAAMFPMMLSGMAGLPNLLSMGGLLGKPPHDATGGAE
QRKRKKGSREGGVGEPSSASSKAPSSHSHGPSHTSDTKGERTEGQSRDGDGRIPSVHSPS
SSSATTSTTTPLSASAAQAASSHPLSLNPLLISSMLYPGMLLTPGLNLPVSTTQPPHSDS
NSDHKPHKPTKTFKTAPSKPLSPRRTPECQEEEGLGDKREESGEHKEENSGPEGSGKAES
SSSSESGSSSSSSDGSSDSSDED
NT seq
9252 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcccatcatggacttctttgacgaccccaacctgtttgtgggagggctggac
gggttggctgaggagggcttcccccctggaccctcgctggtggatgagctcaacctcagc
gcaggctttgagcctctacaggtggagccaatgggggcagggaaacaccccgggatgata
cccacctccacccaacagagcatggcttatgggcagcagatggggagttttccaggcatg
aaggcccagaactccatgggacagcccttcgctagctctgagggtgtgggtggtggaggg
atgatagcagcacagcatacccacttccatggacgctcaattggtcaggcaccccaatcc
aacgcgttgttttccaacagcagccccatgtggggcaaccaggaccagaacgggaacctc
taccactcagtgccccagcaacaacaacaactacatcaacaacagcagcagcaactccac
aaccaacagcatcacctccgacagcaacagccacagcagcagcaccacccttgtcaacaa
caacttcagcaacaacaagtgcagcagttacagcagcaacaccagcttctgaaccagcgg
cagcagcagcaccttcatcaacaggtagtgaaccctcagtctctgccccagcagcaccac
agcttccccttccaccaggctaaccaacagccagcttcccacaaccagcagcttaccacc
ggggggacccagttccactccagggctgtgcctaactcaggggctctggccacagctaat
gtggaaactcccaatgcctcgctggctggaaccccaccacagcagggtggctaccagctg
gtgcagggggcctttcctggggtagggccagaagactctagcatgtccttctccatgcag
acctgctcccccatggctcacaccctgtcctcctgctcagtgagctccaccaccacctac
cctccctcccagtactccttccctggccagggacagcctggcatctccagcctgagccag
cctctctctttagccccagtgtccatgatcaccaccaccactcccctgccctcctcagtg
cctgaactctctctcgtgggagctggatgtgcgttttcgtctgctccagggatgactcag
catcatcagcccaaacaggtcccagtcagccaggctgaggacgaatgtcccttccgggct
ctgcgctgctccaggcagaccttagggaactacgactcatccgagatgtttggccaggcc
atgagctgctaccccagtgcagtcagccagctcattccagaccagcaccagccccagaac
tgtggatctaacttggaagttaccagacctccggccagcaccactaccactaacggctac
gtgtctctagaggttagcctggcagggctgcaaggggaggtggaggcccaaggagggggc
tttgagggcctggaggctccggacctgctggctgatgagctgctgcctcagctggaggct
gccctcagtcagcacgatcaccatgactccaactgttcctggaccaatggtggggatgga
gagaggaatggaaagggagaggaagaagaagagatgaaggaggaagaaaggatctccata
tccatggactacaagatacagcctcccaagaacaagaatgctaatggtcccaacagccac
acagcagcgcgggtcctcagccccccgatgaagagcagctcatcctcctcgtcttcgtcc
tcctacagcttgtcgttggagaagcgggcccagcggaggctggtgaaggagcagagggag
cagcagcagcagcaactgatggaggaggctggggaggacaagcagcagaaggctaacagg
atcatccatgaggccattgctaaggcccgggagagaggagagaagaacatccccagggtt
atgagtccagagagcttcccctctgggagctcctcggcccacaggagagagagggagagg
gacagagacagagacagggagagggaccgtggcaacaagaccaggaccaaggcctccaag
aaagcccgcattgtgccctcgtccaagcccaaacagaaggccaagatcgggaaaatcgtc
attaaatttggagggatgaagaagaagagggagacagagtcttcagaggaggggtctgat
gaagaacgtccgcctcgaagatcctttaaagacgatgattcgacgcgtcggtcgaaccgc
caggtgaagaggaagaagtatgcagaggagggagaggccagggtgtctgatgaggaggtg
aaggtcatggttaaaaccaagaagaccagcactgctgcagcacgcaaagagccagcacag
cagctgtttgtggaaaaccccagtgaggaggatgctgcggttgttgacaagatcatgtca
tctcgaatagtcaagaacgaggtcgctccaggagttatcgtagaagtggaggagttcttt
gtaaaatacaaaaactactcctacctccactgtgagtgggccgtagagcagcagctggag
aaagacaagaggattcagcagaagatcaaacgtttcaagattaaacaggcacagagagcc
cacttctttgcagatatggaggaggatccctttaaccctgactatgtggaggtagacaga
gtactggaggtgtcctattgtgaagacaaggacacaggagaggtggtgtactacctggtg
aagtggtgctctctgccctatgaagacagtacatgggaactgaagggggatgtggaccag
agtaaaatagaggagtttgagctgctgcaggcagcaaggccagactcccgcaggatggag
cgtcccccagccagcctgtggaagaagagggatcagtcgagggagtacaggaacagtaac
gtcctcagggactaccagctggagggagtcaactggctcctcttcaactggtacaacaga
cggaactgtatcctggcagatgagatgggtctggggaagaccatccagtccatcacgttt
ctggaggagatctggcgtgtgggcatcaggggccccttcctcatcatcgcccccctctcc
accatcgccaactgggagagggagttcagaacgtggacccacctcaacgttattgtctac
cacggctccatggtcagcaggcagatgctgcagcagtacgagatgtactccagagacaca
cagggtcgtgtggtgcggggagcctacaagttccacgccctcatcaccacctttgagatg
atcctgggcggctgtccagagctcaacgccatcgagtggcgctgcgtcatcatagacgag
gcccaccgcctcaagaacaagaactgcaagctgctagagggcttcaagctcatgaatctg
gaacacaaagctctcctgacagggacccccctccagaacacagtagaggagctgttcagt
ctgctgcacttcctggagcctcaaagcttcccctcagagaataccttcatgctggagttt
ggagacctcaagactgaggagcaggtccagaagttgcaggccatcctgaagcccatgatg
ctgcgtcgtctcaaggaggacgtggagaagaagctggctcctaaggaggaaaccatcatt
gaggtggagctgaccaacatacagaagaagtactacagagccatcctagagaagaacttc
tccttcctgtctaaaggcgtcggccaggccaacgtccccaacctggtcaacaccatgatg
gagctgaggaagtgttgtaaccacccctacctcatcaaaggtgctgaggagaagatcttg
gaggacttccgagaggtgtacagccctgttgcctttgatttccacctgcaggccatggtg
cagtcggctggtaaactggtcctcatagacaagctgctgcccaagatgaaggccggggga
cacaaggtcctcatcttctcccagatggtccgctgtctggatatcctggaggactacctc
atccagagaaggtacctgtatgagcgtatcgatggcagagtgagaggtaacctgcgtcag
gcagctatagaccgtttcagcaaacccgactcggaccgctttgtgttcctgctgtgtacc
cgggctggaggtctgggcatcaacttgactgctgctgacacctgtattatctttgactca
gactggaacccacagaacgacctgcaggcccaggctcgctgccataggattggtcagaac
aaggcggtgaaggtgtaccgtctgatcaccaggaactcttacgagcgggagatgtttgac
cgggccagcctcaaactgggcctggacaaggctgtgctgcagagcatgagtggcagagag
aacagcgtgccgggaggagggccgacccagcagcagctgtctaaaaaggagatcgaggac
ctgctgaggaaaggggcgtatggagctctgatggacgatgaggatgagggggccaagttc
tgtgaggaggacatcgaccagatccttcaacgcaggaccaagaccatcaccatcgagtct
gagggacggggatcgacctttgccaaggccagttttgtggcatccggaaaccgcacagat
atttctctggacgaccccaacttctgggacaagtgggccaagaaggctgagattgacatg
gacactgccaatggcagaaacagcctggtaattgacactccgagggtgaggaagcagacc
cgacccttcagtgccactaaggacgagctggcagagctgtcagagggggagagtgacaat
gaggacaagcccaagctccgccggccccacgaccgcctcaacagctatggcaggacagag
tgcttcagagtggagaagaacctactagtatacgggtggggtcgttggaaggatatcctg
ctccatggtcgttttaagaagcagctgacagagcgtgatgtagagtctatctgcagagcc
cttctggcctactgtctggttcactaccgcggtgacgacaagatcaagagcttcatgtgg
gacctgatcgccccctccgaggacggacagaccaaggaactacagaaccacctgggtctg
tcgaccccagtccccagaggcaggaaagggaagaagatgaagactcaatccagcacattt
gacatccagaaggctgagtggatcaggaagcacaacccagaacacatgctgcaggacgag
ggatacaagaagcacctcaaacaccactgcaacaaggtgttgctgcgggttagaatgctc
tactacctgaaacaagaggtgatgggaagccagtcacagaagatactggacggcgtggac
tccagtgagatcaagatctgggttcctgagcccgacagctctgagctaccagccctgtgg
tgggacaacatctctgacaagtgtctgctgttgggggtctacaagcacggttatgagaag
tataacacagtgcgtgcagaccctgccctctgcttcctagagcgggtgggccggccagac
gagaaggccatcgctgctgaacagagagccaatgacttcatggatggggacgtggatgac
ccagaatacaagcctgccccagccttgctgaaggacgatatggaggatgacgcctcctct
cctggagatctggttgtctcagacaaccctggagagggtgctccagtgatgatggagggg
ttaggtggtggaggaggaggagacgcagcctactggccctcctcctcagtgctaacagcc
agactgagacgtctgatcacagcctctcagcgctacaccaagtccagacagatcctccac
atccaccagacccagcacaccacccaggtcacgccctcactgtgtcccctgccacccacc
ctcaacgacactatcaaccccaagatggccgccaagatagaacgccagcagagatggacg
aggcgagaggaagctgatttttaccgtgtggtgtctacctttggtgtggtgtttgaccca
gacctgggccgtttcgactggaccaagttcagagccatggctcggctgcacaagaagaca
gacgagagtctgcagaagtacctgtgggccttcactgccatgtgcaggagagtgtgtcgc
ctgccacccagagaaggagacacagcagtggacccctctctgtccattcagcccatcaca
gaggagcgtgcatctcgtaccctctacagagtagagctgctgcgccaggtcagggaacag
gtcctgcgccaccccttgctctatgagcgcctgcccctgtgccagctgggctcggacctg
cccgtgtggtgggagaccggtacccacgaccgagacctcctaatcggggccaccaagcac
ggcgtcagccgcacagactaccacatcctccgagacccagagctctgcttcatggctgcc
cagcgcaactacagccagaataaaggagtccaacagccatcccagacccctactccgctc
ttgaatccccagtaccaggctagtagagacccagccttggcagagtccccagtgccaacc
ccagcccagatggaaagggaggacatcccgggggcagtgcccaaagaagaacctctctcg
gagggggaggagcgcatggagagagggggccaggtggagggggagaggtggagtccccag
cctgcccctctcacccctacagggatagaggagaagcctgacctgggggtggtgaaagga
gagaacgagagccacatggtggcggcacggaccaagccactcacacccaactcagccgcc
aggaaagagaagaaagccaataaaagaagtcgaagagaggccagacgagccgcctccgca
gcatcagactccgactcggacggctcctcctccagctcttcatcacgatcttcttcatca
tcgtcatcgtcgtcctcttcctcctcacgctccggatccagctcctcttcgtcttcatcc
tgctcatcaggctcctcatcttcctcttcctcatcttcatcttcctctgttggcagtgag
agtgagggagaggaaggaaagatcaaggttccgacagtggccatcgtgaagggatttgac
gaagacagtgtggcgtctctcagcaccactcaggatgagatgcaggacagtcacgtgaca
gagaacggcagcaacaactcacaccaccaccccttccagggaggatacatgctggctgca
tcctactggcccaaggaccgtgtgatgatcaaccgtctggacagtatctgccaagcagtg
ctgaaggggaagtggccgggggcccggcggtcgtacgaggcaggaggggctgtagcctcc
ttctacaccaccaagctgctggacaatgcagctgcggccaacaacagcagcaacctctgc
tcagcttccgccttggcctcagaggacccctctgcctcccctcagggttcaaaggtgaag
aagcatgttgcaggagaaaaggagttctcagtgaaaatgaatgaacaggaggggggtctg
aagctgaccttccagaagcaggggcccggccagcccctgaagaggcccctggagcctgag
gaggggcccctgagccagcagcagtaccttacaaggctccatgagctccagagtgcctca
gacaccagtctggctgacttcaccaagccccaggctgccagcttcccacaggcatctaca
ggtctggcaggtcagatgaagctgaacggaggtatggatggccagccggtggtgaagagg
aggagaggaaggaggaagaatgtggaggggatggacctgctctttatgaacaggaaaaga
ggaccagccgtgcctgaaagcgtgcccccggcgtggggtggtatgagtcaggctggcact
gggctgtctattgcctcagggcaggttaaccccctaggggcccagggccctatggacaca
gagagcagagtctctgtcatcaacctgaaagatgggacccgtctggccggagacgatgcc
cccaggaggagggagctggaactgtggctcaaagaacacccaggctttgtggctgacaca
ggggccttcatccctggagtgaataagaggcagctggagcagttccagcaggatggtaga
cccaagcagaagaggcatcgctgcaggaaccccaacaagatcgatgtcaacagtctgaca
ggagaggagagggtccagatcatcaacaggagaaatgcacgcaaggttggtggggccttc
gccccccctctaaaggacctgtgtcggttccttcaggagaacccagagtacggggttcca
ccagagtgggccgacgtcgtcaagcagtcgggctaccttccagagagcatgtttgaccgg
atcctgacaggacccatcgtaccagaggaggtgagtcggcgtggacggaggcccaagagc
gccctggccaaggctgcagctacagccaaccagggggccccatccctgggcctcaacccc
ctgctggccaacggcctcctctctggcatagatctatctagtctacaggccttccagcag
aacctccaaagtctccagtcactgcagctcactgccggcctcatgggcctgcccaccgat
gctaacaacctggccgccatgtttcccatgatgctctctggcatggctgggcttcccaac
ctcctgagcatggggggtctgctggggaagcccccacatgatgccacggggggagctgag
cagaggaagaggaagaagggaagcagagaaggaggagtaggggagccctcgtctgcctcc
tccaaagccccctcctcccactcccacggcccctcccacacctcggacaccaaaggtgaa
aggacagaaggtcaaagcagggacggagatggccgcatccccagtgtccattccccctct
agttcctctgccaccacctccaccaccaccccactaagtgcttctgctgcccaggcagcc
tccagtcaccctctgtctcttaaccccttgttaatctccagtatgctttacccagggatg
cttctcactccaggccttaaccttcctgtgtccaccacacagccaccacacagtgactca
aacagtgaccacaaaccccacaagcccactaagacctttaagaccgccccctcaaaacct
ctgtcgccaaggagaacaccagagtgtcaggaagaggagggtcttggtgacaagagggag
gagtcaggggaacacaaggaggagaacagtggtccagaaggctcggggaaggcggagtca
tcttcttcatcagagtctgggagctcttcttcatcatctgatgggtcatcagactccagt
gatgaagactga
DBGET
integrated database retrieval system
