Oncorhynchus mykiss (rainbow trout): 110526655
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Entry
110526655 CDS
T07259
Name
(RefSeq) TATA-binding protein-associated factor 172 isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110526655
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
110526655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
TOR1L1_N
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
110526655
NCBI-ProteinID:
XP_021463472
Ensembl:
ENSOMYG00000017095
LinkDB
All DBs
Position
1:complement(63148644..63223684)
Genome browser
AA seq
1856 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAIQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKPKEESCADFSPEDSSSDRLSFYRFDISRLLKHGASLLGS
AGAEFEVQDDKSGEVDPKERLARQRKLLQRKLGLDMGAAIGMDTMELFNDEDLDTQYTCT
PSGPKAQGQGERGSEPCSSSGNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRS
RDMDPNERSNDSFEGEPEEKHRKTSNVVIEQPATEHKVLIDNVPDNSSLLDETQEWPLES
FCDELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVGSTAEQMARHHQEWLEDVVIR
LLCVFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMTDSGVAMTVDILLKLLTEDQWEV
RHGGLLGIKYGLAVRQDLISALLPRVLPAITQGLQDLDDDVRAVAAAALIPVVDGLVQLL
PNKVPFIVNSLWDALLELDDLTASTNSIMTLLSSLLAYPQVRQCSMQQSLTVLVPRVWPF
LRHTISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQK
VWTELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKSRCKEKAGGKPRQG
ALVQVKETVQEYIAGAETVTEDPVTRDYVVTRARLMAAKLLGALCRCICDPQLNSSSQDI
RPAESLGQLLLFHLNSKSALQRIVVALVLCEWAAVQKVVSAMVQPRLLAILSEQLYYDEI
AIPFTRMQNECKQLIALLADAQIDVRDRLNCSVFTIDQANELVTTIFAESTVGLDTKSKQ
FHPLDSKRQQAQSTVGETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAKR
EENTLVQGYAASFIAKLLQQCATRQPCPNSKIVKNLCSSICMDPLLTPSSACPVPPTQTA
KAGMSEKECMHHMVNKTKGIITLYRHQRAAFVITSKRGPTPKTSKTPTTELPPGSTITTD
TDENKKPFLVQRRGAEFSLTTVARHFGQELTGSLPYLWEFVVGPLRAVVENNQGIDAKLQ
LERGDAAAQELVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAARCVG
VLSKIATMETMHLFLECVLPWLGCIEDGTKQEGAIEAMACVMEQLDVDIVPYIVLLVVPV
LGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFMEQLLDSR
KLENYKIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHYL
RAQEYAKTKAADCTPLPSLVVCPPTLTGHWVDEVGKFCTDEYLNPLHYTGPPTERARLQH
QVKKHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVIL
SGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEA
LHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVSVEDTISTA
SIHEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDIQH
SPKLSALKQLLLDCGLGSSGSAEGTEAVVAPHRVLIFCQLKSMLDIVEHDLLKPQLPAVT
YLRLDGSVPTGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRD
LQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVISQENASLQSMGTDQ
LLNLFTLDKEGKDDKGESSSGGKASIKNVLDGLGDLWDQQQYETEYNLDSFMHSLH
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgtcaaggcttgatcgtctgttcatcctgcttgacactggaactacaccggtg
acgaggaaggctgctgccatacagctgggagatgtggtcaaactccacccgcatgagctc
aacaaccttttgtcgaaggtgttgacatacttgagaagtccaaactgggacactcgtatc
gctgcaggtcaggcagtggaggccattgtgaagaatatcccagagtggaacccgtcaccc
aagcccaaagaagagtcgtgtgcagacttctccccagaagactcctcctctgaccggttg
agtttctaccgctttgacatttcccgcctgctcaaacatggtgcttctctactgggttcc
gccggtgcggagtttgaggtccaggatgacaagtctggtgaggtggaccctaaagagcgt
ctggcccgccagaggaagctgttgcagaggaagctgggactggacatgggtgccgccatc
ggcatggatacgatggagctgttcaacgacgaggacctggacacccagtacacctgcacg
ccgagtggccctaaggcccagggacagggagagaggggctctgaaccctgctccagctcc
ggcaatcacgtgcccatgcaggcggcagagataatagactcagagtttcgaccaggcatg
agcaaccgacagaagaacaaggctaagaggatggccaagctagtggcaaagcaacgatcc
agagacatggatcccaacgagagaagtaatgacagttttgagggggagcctgaggagaag
cacaggaaaactagtaacgtagtcatcgagcaaccggcaacggagcataaagtcttaatc
gataacgttccagacaactccagtctcttggacgagacccaggagtggcccctggagagc
ttctgtgatgagctctgtaatgacctcttcaacccctcatgggagattcgtcacggagca
ggcacaggcctcagggagatcctcaagtctcaaggcgctggaggtgggaagctggtggga
agcactgcagaacagatggcgcggcaccaccaggagtggctggaggatgtggtcatccgg
ctgctctgtgtctttgctctggaccgtttcggagattttgtctctgatgaggtggtggct
ccggttcgagagacctgtgcccagacactgggcgtggccttgcgccacatgactgacagc
ggtgttgccatgacagtagacatcctgctgaagctgctgacggaggaccagtgggaggtc
cggcacgggggtcttctgggcatcaagtatggcctggcagtcagacaggacctgatatcc
gctctgcttccacgggtgctccctgccatcacgcaggggctgcaggacctggacgatgat
gtcagagcggtggcggccgcggccctcatccctgtggtggacgggttagtgcagctactc
cccaacaaggtcccattcatagtgaactccctgtgggacgctctcctggagctggatgac
ctgacagcctccaccaacagcatcatgaccctactgtcctctctgctcgcctaccctcaa
gtccgacagtgcagcatgcagcagtccctaacggtcctcgttcctcgggtctggccattc
cttagacacaccatatcatcagttagacgggccgcactagagacccttttcaccctacta
tccaaagctgaccagagctgtgcattatggctcaaccaggtcctgcaagacatgctccga
cacatcttccagtcctgcatcctggagagcaatcaggagatcctggacctcatccaaaag
gtgtggaccgagctgctgcgccaggcccctcagcagtacgtagtagcagccagctgtccc
tggatgggcgcctggctctgtctgatgatgcaagcctctcacatccccatagacatcaac
atgctgctggaagtcaagtctcgctgcaaggagaaggctggtgggaagcctcgccaggga
gccttggttcaagtgaaggagactgttcaggagtacatcgccggggcagaaaccgtgacc
gaggacccagtgacgcgggactatgtggtgacacgggctcgactcatggccgctaagctg
ttgggggccctgtgtcggtgtatttgcgacccgcagctcaattcatcctcccaggacatc
cggccggctgagtcgctgggccagctgctcctcttccacctcaactccaagtctgcactg
cagcgcatcgttgtggccctggtcctctgtgagtgggccgccgtgcagaaggtggtgtca
gccatggtccagcctcgcctgttagccatcctgtcagagcagctgtactacgatgagatc
gccattcccttcacacgcatgcagaacgagtgtaagcagctcatcgccctgctggccgac
gctcagatcgacgtgcgcgaccgcctcaactgcagcgtgttcactatcgaccaggccaac
gaactggtgaccactatcttcgcagagtccaccgtgggcctggatacgaagtccaaacag
tttcatccactggacagcaaacgtcagcaggcccagtccacagtgggcgagaccagtgtg
gagtggcagcagctgcacctgcgcgtccacatgttcaccgcctgcgccgtggttaacctg
caggcgttaccagacaagctgaacccagtggtgcgtccgctcatggaggcagctaagcgg
gaggagaacaccctggttcagggttacgccgcctccttcatcgccaagctgctgcagcag
tgtgctactaggcagccgtgtcccaattccaagatcgtcaagaacctgtgttcgtcgatc
tgcatggaccccctactcacgccctcctcggcctgccccgtgccccccactcagactgcc
aaagctggcatgtcagagaaagaatgcatgcaccacatggtcaataagactaagggcatt
atcaccctctaccgccaccagagggcagcatttgtcatcaccagcaagaggggccccacc
cccaaaacctccaagacccccaccactgaactgccacccggcagcaccatcaccacagat
actgatgagaataaaaagccatttctcgttcagagaagaggtgccgagttctctctgacg
acggttgccaggcactttggccaggagctgacggggtcactgccctacctgtgggagttt
gtggtgggacctttgagggccgtggtggagaacaaccaaggcatcgatgcaaagctccag
ttggagaggggggatgctgcagcccaggagctggtcaactctctgcaggtgctggaggtc
acggctggagccatggcccccgagctcaaacctctgttgttggagcacctgccccacctg
ttcacctgtctgcagcacccgtacacggccgtgcgtcacatggcggcgcgctgcgttggt
gtgctcagtaagatcgctaccatggagaccatgcacctgttcctggaatgtgtgctgccc
tggctggggtgcatcgaggatggcactaagcaggagggggccatcgaggccatggcctgt
gtgatggagcagttggatgtggacatcgtgccgtacattgtgctgctggtggtgccggtg
ctgggccgcatgagtgaccccagtgacagcgtccgtttcatggccacgcagtgcttcgcc
accctcatccgcctgctaccactggaggcgggtatcccggatcctcccaccatgtcggat
gatctgattcgccagaaggccagagagcgtcacttcatggaacagctgctggacagcagg
aagttggagaactacaagatccctgtgcccatcaaggctgagctccgcaagtatcagcag
gatggagtgaactggctgtccttcctgaataagtacaagctgcatggtatcctgtgtgac
gacatgggcctgggcaagaccctgcagtccatctgcatccttgctggggaccactacctc
agggcacaggagtatgccaagaccaaggcagcagactgcacccccctgccctctctggtg
gtgtgcccccccacactgacgggtcactgggtggacgaggtgggcaagttctgcaccgac
gagtacctgaaccccctgcactacacaggaccccccacggagcgagcacggttacagcat
caagtgaaaaagcacaacctagtagtagcctcttacgatgttgtacgaaacgacatagac
ttttttaggaatataaaattcaattactgtatcctcgacgagggccatgtgatcaagaac
gggaagaccaagctctctaaggccattaagcagttggcggccaacttccgagtcatccta
tcaggaacgcccatccagaataatgttctggagctgtggtcgctctttgacttcctcatg
cccggcttcctgggcacagagcgccagtttgctgcccgctatggcaagcccatcctggcc
agccgtgacgccaagagctcgtcgcgcgagcaagaggccggggtgctggccatggaggcg
ctgcatcgccaggtgctgcccttcctcttgaggagaatgaagaaggacgtgctgcaggac
ctgccccccaagatcatccaggactactactgcaacctcagccctctacaggttcagctg
tatgaggactttgccaagtcccgggccaaggtcagtgtggaggacaccatctctacagcc
tccatccacgaagaggagaagcccaagctgaaggccacgggccacgtgttccaggctctg
cagtacttgcggaagctgtgtaaccacccaggcctggtactgctgccacagcacccagag
tacaagcgcatcacagaccagctggcagcacaacactccagcctccgagacatccagcac
tcgcccaaactctcagctctcaaacagttgttgttagactgtggtctgggcagcagcggc
tcagcggagggcacagaggcggtggtggccccgcacagagtgctgatcttctgtcagctg
aagagcatgctggacatcgtggagcacgacctgctcaagccccagctgcccgccgtcacc
tacctgcgactggacggcagcgtcccgactggcctgcgccactccatcgtctccaggttc
aacaacgacccctccatagacgtgctgctgctcaccacccacgtgggcggtctgggtctg
aacctgaccggcgctgacacggtggtgtttgtggaacatgactggaaccctatgagagac
ctacaggccatggaccgcgcacacaggataggacagaaacgcgtggtgaacgtgtatcgt
ctgatcacgcgtggcaccctggaggagaagatcatgggcctgcagaagttcaagatgagc
atcgccaacactgtcatcagccaggagaacgccagtctgcagagtatgggcaccgaccag
ctcctcaacctcttcaccttggacaaggaagggaaggacgataagggcgagtcgtcctct
ggagggaaagcctccattaagaatgtgctggacggcctgggggacctctgggaccagcag
cagtacgaaaccgaatacaacctggacagctttatgcactcgctccactag
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integrated database retrieval system
