Oncorhynchus mykiss (rainbow trout): 110526948
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Entry
110526948 CDS
T07259
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110526948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110526948
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110526948
Spliceosome [BR:
omy03041
]
Complex C
Other components
Step II factors
110526948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
Toxin_trans_Wo
T2SSE
nSTAND3
nSTAND_NTPase5
Sigma54_activ_2
AAA_30
AAA_16
Flavi_DEAD
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
110526948
NCBI-ProteinID:
XP_036836648
Ensembl:
ENSOMYG00000046456
LinkDB
All DBs
Position
6:66756330..66776332
Genome browser
AA seq
1258 aa
AA seq
DB search
MDDDASLHRLEGSDPTAQVGGLIVKKKSAAVEPHVFRAPTPRTSLLGLDLLAAQKRKERE
GKEQAEADSDDRNNKKSKVSSYKDWEEGKSDSGSDEEDKDEEDQGGKKESSRKYRVTGSE
TPSNPGGVSEEFRRKHQQREKDRREHGMYASSKEDKNRERIRDTDRDRRGERDERERSHS
RGGGSCRSERGDRSERSERSQREGWSSERISRGSKREEPSTPQTRPKDGTPSRTSWDEDD
SGYASSRRSHWESPSPAPSHKDSDKSERSERSPRSGRESERKDKSVRGRYPDDTPLPTPS
YKYNEWANDRKHLGSTPRLSRGKGKNEGEDGIAFDNDDEKQQWEEDQKQADRDWYMMDEG
YDEFHNPLTSTSEDYVKKREQILQKQTQKRISAQRRQINEDNERWETNRMLTSGVVQRLE
VDDDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQLVR
KHREQKERKKAQQKHWELAGTKLGDIMGIKKTEDGDSSGGKPVGEDGKVDYRTDQKFADH
MKDKSEASSEFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQY
LHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEELGSNLGEEVGYAIRFEDCTSEKTVIKYM
TDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTSATMD
SDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMGGDILIFMP
GQEDIEVTSDQIVERLEDLESAPPLTVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIA
ETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQCYRL
YTQSAFKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLW
ILGALDNTGSLTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFYRPK
GREEESDQVREKFSVPESDHLTYLNVYLQWKNNNYSSIWCNEHFIHTKAMRKVREVRSQL
KDIMVQQRMNLVSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLF
GMGYTPDYITYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRMENRRRAKEE
ITNMEEEMSLAEQQLRSRREDQDRKSNVGSVRAVKICTPGRKEEAPMTPKRTPARFGL
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgatgcgtcactgcatcgactggagggcagtgaccccactgcgcaggttggc
gggctgattgtgaagaagaagagtgcagcagtagagcctcatgtctttcgtgcacccact
ccacgcacctctctcctgggcctggatctgctggcagctcaaaagagaaaggagcgagag
ggcaaggagcaggctgaggctgacagcgatgacaggaataacaagaaatccaaggtgtcc
tcctacaaggactgggaggaagggaaaagtgattctgggtctgatgaagaagacaaagac
gaggaggatcaaggtggtaaaaaagagagtagcaggaagtaccgtgtgactggctcagag
acaccctctaaccctggaggggtcagtgaagagttccgtcgcaaacaccagcagagggag
aaagaccggcgtgagcatggaatgtacgcctcttccaaagaggacaagaacagagagagg
atcagagatacggacagagatcgaaggggtgaaagagatgagcgggagcgcagtcacagc
cgcggcggcggcagctgccggtcggagcgtggagaccgcagtgagaggagtgagcgctca
cagagagaaggctggtcctccgaacgcatcagccgggggagcaagagagaggagccttca
acgccccagacacgccccaaagatggcactccctcgcgcaccagctgggatgaggatgac
agcggctatgccagctcacgccgttcccactgggaatctccctctcctgccccttcacac
aaggactctgacaagtctgaacggtcggagcgcagcccccgctctggacgggagagtgag
aggaaggacaagtcagtcagaggccggtatcctgatgacacgccccttcccaccccttca
tacaagtacaacgaatgggccaatgacaggaagcacttgggctccacacctcgtctgtcc
cgtgggaaaggtaagaatgaaggagaggatggcattgcctttgataatgatgatgagaag
cagcagtgggaggaggaccagaagcaagcggacagagactggtacatgatggacgaaggc
tatgacgagttccacaacccactgacctccacctctgaggattatgtgaagaaaagagag
cagatcctgcagaagcagacacagaaacgcatctctgcccagagacgacagatcaatgag
gataatgagcgctgggagactaatcgtatgctgaccagtggagtggtccagaggctggag
gtggatgatgactttgaggaggacaatgctgccaaggtccacctgctggttcacaacctg
gtccctcccttcctggacgggaggatagtcttcaccaagcagccggagcctgtcatccct
gtgaaagacgccacctctgacatggccatcatctcccgcaagggcagccagctggtccgc
aagcaccgcgagcagaaggaacgcaagaaggctcaacagaaacactgggagctggcaggc
accaagctgggtgacattatgggcatcaagaagaccgaggacggggatagctctgggggc
aagccagtgggtgaggatggcaaggtggactacagaacggatcagaagtttgcagaccac
atgaaagataagagtgaggccagcagtgagtttgctaagaagaagaccctgctggagcag
aggcagtatctgcccatcttcgctgtgaggcagcagctgctcaacatcatcagggacaac
agcattgtgattgtggtgggggagacgggcagtgggaagaccacccagctgacccagtac
ctacacgaggacggctacaccagttacggcatggtgggctgcacccagccccgcagagtg
gcagccatgagcgtggccaagagagtcagcgaggagctgggcagcaacctgggagaggag
gtgggttatgcgatccgttttgaggactgtacgtcggagaagactgtgataaagtacatg
acagacggcatcctgctgagagagtctctcagggagtcagatctggaccactacagtgct
gtcatcatggacgaggcccacgaacgctccctcaacacagacgtgctgttcggcctgcta
cgagaggttgtatcgaggcgttctgacctcaagctgatagtcacctcagccaccatggac
tctgacaaatttgctgcatttttcggcaacgttcccatattccacattccaggaagaaca
ttccctgtagacatcttattcagcaagactccccaggaagactatgtggaggcagcagtg
aagcaggccctacagatccaccttagtggtatggggggagacatcctcatcttcatgcct
ggccaggaggacatcgaggtgacgtcagaccagattgtggagcgtctggaggatctggag
agtgcccctcctctgactgtactgcccatctactcccagctgccctctgacctccaggcc
aagatcttccagaaggctccagatggtgtgaggaagtgcatcgttgccaccaacattgcc
gagacctccctgactgtggatggtatcatgtttgttgtggatgctggatactgcaaactc
aaggtgttcaaccctcgcattggcatggatgccctgcaggtgtaccccatcagccaggct
aacgccaatcagcgtgcgggcagagcaggacgtacaggaccgggccagtgttacaggctg
tacacccagagcgccttcaagaatgagatgttgaccaccaccatcccagagattcagcgg
accaacctggccaacgtggtgctgctgctcaaatccctgggggtccaggacctgctgctc
ttccacttcatggaccccccgcctgaggacaacatgctgaactccatgtaccagctgtgg
atcctgggggccctggacaacacaggttccctgacgcccactgggaggctgatggtggag
ttccctctggacccggctctgtccaagatgctgatcgtatcatgtgacatgggctgcagt
gctgacatcctcatcatcgtctccatgctgtctgtaccggccatcttctacaggcctaag
ggtcgtgaggaggagagtgaccaggtgagggagaagttctctgtcccagagagtgaccac
ctgacctacctgaacgtctacctgcagtggaagaacaacaactactccagcatctggtgc
aacgaacacttcatccacaccaaggccatgcgaaaggtgcgcgaggtgcgctcccagctc
aaagacatcatggtgcagcagaggatgaacctggtgtcctgtggctcagactgggacatc
atcaggaagtgtatctgtgctgcctacttccaccaggcagccaagctgaagggcataggg
gagtatgtgaacgtgaggacaggcatgccctgccacctccatcccaccagctctctgttt
ggcatgggctacaccccagactacatcacctaccacgagctggtcatgaccaccaaggag
tacatgcagtgtgtgactgcggtggatggggagtggctggctgagctggggcccatgttc
tacagcgtcaaacaggcagggaagagcaggatggagaaccggcggcgggccaaggaggag
atcactaacatggaggaggagatgtctctggcggagcagcaactgaggagcaggagagag
gatcaggacaggaagagtaacgtgggcagcgtcagggctgtgaaaatctgcaccccggga
aggaaggaggaggcacccatgaccccaaagcgcaccccagctcgttttgggctctag
DBGET
integrated database retrieval system
