Oncorhynchus mykiss (rainbow trout): 110527158
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Entry
110527158 CDS
T07259
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110527158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omy04131
]
110527158
Membrane trafficking [BR:
omy04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110527158
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR-S
Motif
Other DBs
NCBI-GeneID:
110527158
NCBI-ProteinID:
XP_036837848
Ensembl:
ENSOMYG00000001321
ENSOMYG00000001422
UniProt:
A0A8C7LRA2
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Position
7:652106..663674
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AA seq
874 aa
AA seq
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MSVKAFELVPAVERELLMGDKARINIECIECCGKHLYVGTNDCFIHHFLLEEHATTKGML
SYTVQKLLFKYLGLKKPVEALKAASALERIIVLCDATVSVIDMITLEPVPSGGAKIKGVA
AFCVNENPVNGDPFCVEIGVLSARRRTVQIYMVYEDRVQLVKEVNTPEQPCAVSLDGYFL
CLALSTQYMILNYSTGAAQDLFPYDSEERKPIVKRIGREEFLLAAPGGLGMFANAEGISQ
RAPVNWSESVMGAAVCFPYVVALDEGFVTIHSMLDQQLKQTLSFRDGHILQDFEGKVVLA
STKAVYVLVPLPLERQIQELLAGHRVEEALALTEGARRNIPKDKFQILHRRILQQAGFIQ
FGQLQFLEAKEHFRTGQLDVRELISLYPLLLPASSSFARCHPALHGFADLNHLAQGDQDK
VQRCKRFLITYLGEVRSTEGANGCREDVDTALLKLYAEQDHESLLDLLASPNACLLADSA
PWLEKHHKYFALGLLYHYNGQDSAALQLWVRIVNGDLQDSTRSDLYEYIVDFLGFCSNPD
LVWKYADWALQRDQTIGVQIFTRRPVGQDQVKEQKDQVNPDDVITYLGKHSQALLLYLEH
LVLGRRIQKEKLHTHLAVQYTDRVLSLLSQSPPVDQQVSVARDKLQLLLRESSLYRVQLL
LGKIQECDQLFLERATLHGKLEEHDKALHILVHQLKDFPAAEAYCVWGSASRDPAYQQSL
FHLLLGVYLDRDLPSSTVTGELEMAAVDLLNRHGEVFDAVRVLDLLPEGWSLQLLRPFLG
RALRGSMHACRTSQVALGLARSENLQLQHDRLKQRRSPVLVSQKKGCVLCHNTFSEPDCV
CLPGGVPVHTHCAAQRVVRDSPTRRQLANSNNHT
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcatttgagctggtccctgccgtggagcgggagctcctgatgggagac
aaggcccgcatcaacattgagtgcattgagtgctgcggcaagcacctgtacgtgggcacc
aacgactgcttcatacatcacttcctgctagaggagcatgccacgaccaaggggatgcta
tcctacaccgtccagaagctgctgttcaagtacctgggcctgaaaaagcccgtggaggcc
ctgaaggccgcgtcagcgttagagcgcatcattgtgctctgtgacgctacagttagtgtt
attgacatgatcaccttagaacccgtgccttcgggcggggccaagattaagggcgtggcc
gcgttctgcgtcaacgagaacccggtgaacggggacccgttctgcgtggagatcggggtg
ctctcggcccggcggcgcaccgtacagatatacatggtttacgaggacagggtgcagctg
gtgaaagaggtcaacacgccggagcagccgtgtgcggtcagtctggacggttacttcctg
tgcctggccctctccacgcagtacatgatccttaactacagcacaggggccgcgcaggac
ctgtttccctatgacagcgaggagaggaagcccatagtcaagaggatcggcagggaggag
ttcctcttggctgcccctggtggcctgggtatgtttgccaatgcagagggtatatcccag
cgtgctccagtgaactggtcagagagtgtgatgggagcggctgtgtgttttccctatgtg
gtggcgctagacgagggcttcgtcaccatccacagtatgctggaccagcagctcaaacag
accctctccttcagagacggacacatcctacaggactttgaaggtaaggtggttctggcc
tccactaaggctgtgtacgtgctggtgcccctacccctggagagacagattcaggagctg
ctagctggacacagagtggaggaggccctggctctgactgagggagccaggaggaacatt
cccaaagacaagttccagatattgcacagaagaatcctccagcaagcaggattcatacag
tttggacagcttcagtttctcgaagcgaaagaacacttcaggacaggtcagttggacgtc
cgggagttgatctccctctaccctctcctcctcccggcctcctcctccttcgcccgctgc
cacccggcgctccacgggttcgccgacctcaaccacctggcgcagggggaccaggacaag
gtccagaggtgcaagaggttcctcatcacgtacctgggtgaggtgcgaagcacggagggg
gctaacggctgccgggaggatgtggacacggctctgttgaagctgtacgctgagcaggac
cacgagagtcttctggacctgctggcctcccccaatgcctgtttactggcagacagcgcc
ccctggctagagaaacaccacaagtactttgcactaggcctcctctaccattacaacgga
caggattcagctgctctacagttgtgggtgcggatagtgaatggggaccttcaggactct
accaggtctgacctgtatgagtacattgtggacttcctgggtttctgttccaacccggac
ctggtgtggaaatatgcggactgggccctgcagagagaccagacgataggggtgcagatc
ttcaccaggaggccggtgggtcaggaccaggttaaggagcagaaggaccaggtgaaccca
gacgacgtcatcacgtacctggggaaacacagccaggctctgctgctctacctggaacac
ctggtgctgggccgacggatacagaaagagaagctccacacccacctggcagtgcagtac
acagacagagtcctgtctctcctgtctcagtcccccccagtggaccaacaggtgtcagta
gcccgggacaaactccagctcctcctcagggagtccagcctgtaccgcgtccaactacta
ctgggtaagatccaggaatgtgaccagttgtttctggagagagccacgctccacgggaaa
ctagaggagcacgataaggcgttacacatcctggtgcaccagctcaaagacttccccgct
gctgaggcctactgcgtgtggggttccgcctcccgggacccggcctaccagcagagcctc
ttccacctcctcctgggggtctatctggaccgggaccttcccagtagtacggtcaccggg
gagctggagatggcagcggtggacctgttaaaccggcacggggaggtgttcgacgctgtg
cgcgtgctggacctgcttcctgaaggctggtccctgcagctgcttcgcccgttcctcgga
cgcgccctgcgggggagtatgcacgcctgccgcacctcccaggttgcactggggctggcg
aggtcagagaacctacagctgcagcacgacaggttgaagcagaggaggagccccgtcctg
gtatcacagaagaaggggtgtgttctgtgccacaacaccttcagcgagccggactgtgtg
tgtcttccaggaggcgtgcccgtacacacacactgtgccgcccagagggtggtacgagac
tcgcccaccaggagacaactagccaatagcaacaaccacacatga
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