Oncorhynchus mykiss (rainbow trout): 110527338
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Entry
110527338 CDS
T07259
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
110527338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110527338
03041 Spliceosome [BR:
omy03041
]
110527338
03036 Chromosome and associated proteins [BR:
omy03036
]
110527338
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110527338
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110527338
mRNA cycle factors
Common to processing body (P body) and stress granule
110527338
Spliceosome [BR:
omy03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110527338
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110527338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
110527338
NCBI-ProteinID:
XP_036838552
Ensembl:
ENSOMYG00000005448
UniProt:
A0A8C7NQ02
LinkDB
All DBs
Position
7:complement(13461730..13482918)
Genome browser
AA seq
744 aa
AA seq
DB search
MSHVAVENLHGLEQQLAVLGLNNADGQGGGTGRTCYIPPHLRNQEASKNAVAFSRPSTLS
MAPGSYTPGGWDGGRNNGFVQNGYHDNRMNGGNRYNSGPPRMERGRGGGGFRGGRGGSYN
PVQPMQNAGMFGVYDNKDGGGWNTAKDAYTSFGARPDRGKSAFFNNGGSAPRGSYQRGGF
GGSGNSRWVEESRDDEDWSKPTQANERLEQELFAGGNTGINFDNYDDIPVEATGQNCPHH
IDSFQDVEMGEIIMSNIALTRYTRPTPVQKYAIPIIKNKRDLMACAQTGSGKTAAFLLPV
LSQIYTEGPGEALAAQKSGGQDNGKYGRRKQYPLALVLAPTRELALQIYEEARKFAYRSR
VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLD
MGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSEN
ITQKVVWVEDGDKRSFLLDLLNATVIPSEVQDNAGENIEKPGKNSLTLVFVETKKGADAL
EDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFD
LPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYE
HQHKSNTRGRSKRFTSGGFGARDYRQTSGGGSTGGFGGRGGRQPGGHGGNRGFGGGGGFG
GNFYTSDGYGGNYSHQGGVDWWGN
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatttacacggtctagaacagcagcttgctgtcctaggc
ttgaacaatgctgatgggcagggtggaggcactggcaggacctgttacattccacctcat
ttacggaaccaagaggcttccaaaaatgcagttgctttctctagaccgagcaccttgtca
atggcaccaggaagctatacgcctggcggttgggacggcggacgcaacaatggcttcgtg
cagaatggttaccacgacaaccgcatgaatgggggcaacaggtacaacagtggcccgcct
cgcatggagaggggcagggggggtggaggtttccgcggcggaaggggcgggtcctacaac
ccggtacagcctatgcagaatgccggcatgtttggcgtctacgacaacaaagatggcggc
ggctggaacacggctaaagatgcctacaccagcttcggcgcacgtcccgacaggggaaag
tctgcatttttcaacaacggcgggagtgcaccccgaggaagttaccagcgtggagggttt
ggaggcagtggaaacagccgctgggtggaggagtccagggatgacgaggactggtccaaa
cccactcaggccaatgagcgcctggaacaggagctgttcgctggtggcaacacagggatt
aactttgacaattacgacgacattcccgttgaggccactggccaaaactgcccccatcac
attgacagcttccaagacgtggagatgggagagatcatcatgagtaacattgccctgacc
cgctacactcggcccactccggtccagaagtacgccattccaatcatcaagaacaagagg
gacctgatggcctgcgcccagacaggttctggtaagactgctgcgttcctgttgcctgta
ctgagtcagatctacactgaaggcccaggagaagccctcgctgcccagaagtctggaggc
caggacaatggaaagtatggtcgccgtaagcagtaccccctcgctctggtcctggccccc
accagagaactggccctgcagatctacgaagaggccagaaagtttgcataccggtcccgt
gtgcgtccttgtgtggtgtacggaggggctgacattggccagcagatcagagacctggag
cgaggctgtcacctgctggtggctacacctggacgcctggtggacatgatggagaggggc
aagatcggcctcgactactgcaattacctggtgctggatgaggctgaccggatgttggac
atgggttttgagccccagatcagacgcatcgtggagcaggacaccatgccccctaaaggc
atccgtcagaccatgatgttcagcgctaccttccccaaggagatccagatcctggcgcgt
gacttcctggaggagtacatcttcctggcggtgggacgtgtgggctccacctctgagaac
atcacccagaaggtggtgtgggtggaggacggtgacaagaggtccttcctcctggacttg
ctcaatgctacagtcattccgagcgaagttcaggacaatgcaggtgaaaacatagagaaa
cctggtaagaactctctgacgctggtgtttgtggaaaccaagaagggagcggatgccctg
gaggacttcctgtaccgtgagggttacgcctgcaccagtatccatggcgaccgctcccag
agggaccgagaggaggctctgcaccagttccgctcgggacgctgccccatcctggtcgcc
acggcggtggctgcccgtggcctggatatctccaatgtcaagcatgtcatcaactttgac
ctgcccagcgacatagaggagtacgtccaccgtattggccgtactggacgtgtaggcaac
ctgggtctggccacgtcgttcttcaacgataagaacggcaacatcaccaaggaccttctg
gacatcctagtggaggccaaacaggaagtaccctcctggctggagagcctggcctatgaa
caccagcacaagagcaacacccgcggacgctccaagaggttcacctctggtggcttcgga
gccagggactaccgtcagaccagtggcggcggcagcactggagggttcgggggtcgtggt
ggacgccagcccggtggacatggaggaaaccgtggattcggtggcggcggtggttttgga
ggcaacttctacaccagtgacggctatggaggaaactactctcatcaggggggagtggac
tggtggggcaactaa
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