Oncorhynchus mykiss (rainbow trout): 110527497
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Entry
110527497 CDS
T07259
Name
(RefSeq) CLIP-associating protein 1 isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110527497
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
omy04812
]
110527497
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
110527497
Cytoskeleton proteins [BR:
omy04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
110527497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
XMAP215_CLASP_TOG
HEAT_EF3_N
HEAT
HEAT_EZ
TOR1L1_N
Vac14_Fab1_bd
Sec7-like_HUS
Adaptin_N
Cnd1
MMS19_C
HEAT_DAAF5
ParcG
Paxt-1_C
ZapG-like
KH_DEAH11_1st
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
110527497
NCBI-ProteinID:
XP_036838862
Ensembl:
ENSOMYG00000019724
LinkDB
All DBs
Position
7:21454747..21496011
Genome browser
AA seq
1612 aa
AA seq
DB search
MEWNMEYCMEQVMQKDLGRRLQVGQDIIDSILDKDKSQDLEQDQTMLDRMVDGVATNWVN
SSNFKVALLGMEILTALVTRLQERFRTQIGTVLPSLIDRLGDSKDQVRDQDQALLLKIMD
QAANPQYVWDRMLGGFKHKNNRTRESVCICLIATLNVYGAQGLTLSKIVPHICNLLGDPT
SQVRDGAMNCLVEIYRHVGERVRMDLGKKGLPQSRLNVIFSKFDEVQRSGNMILSPVSDK
NYDDDDSVDGGRSSSSKGPSSGKKAVSMGSFRRPSSASSTKSTGRDGPSAAAAGAVDEED
FIRAFEEVSTMELFSNREMEDAMTKIREVLADDKRDWEHRVTALKKMRSLLLAGAVEFDG
FSQQLRLTEAAFKMSSKDLRSQVVREACITLGHLSYILGNRFDHCAESIMPTLLTLVSNS
AKVMATSGIAVIRLIIRHTHYPRLIPIVTSSCQSKSVAVRRRCFEFLDLLLQEWQTNSLE
RNVAVLTETIKKGVHDADSEARSVARKCYWTFHGHFSREAEQLFQALESSYQKALQSHMK
SSDSILSLPASDRSSSSSQESLNRPQSAKSSMGNTVTRTKAAPSRGPSTPGSLQRSRSDV
DVNAAATASAKTRMTPVPASPAPFSAASALPPGSYASLDNTPGNFRPVGRVRTRRTSSGS
GVGASPSVIDSRGRSRAKMVSVSQPGSRSGSPGRLLSHTYGRISRATAGTTPAERRPKVP
RSHGCSRDTSPDRSGLARSRIPRPSMSQGCSRDTSRESSRDTSPARGFSPLASRRVSRST
SALHSAESVGHSERLGLAHQARISASVNAMRILNTGTEVEAAVADALLLGDARNNKRRPV
RRRYESPGIYSDDDANSDASSACSERSYGSRNGGPPHYMRQTEDVAEVLNHCASSNWSER
KEGLLGLQNLLVSQRILSRVELKRLCEIFTRMFADPHSKRVFSMFLETLVDFITLHREDV
QDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRDSFPFDQQFNILMRFIVDQTQTPNL
KVKVAILRYIECLARQMDPADFVNSSETRLAVSRIITWTTEPKSSDVRKSFHHSWAGEEL
SGRPSTTVASLPGEGNVEERCKQAAQVVLIALFELNTPEFTMLLGALPKTFQDGATKLLH
SHLRNSSNTRVASPSSTMGRTPPPPRHPSSRSSPLTSPTNCSHGGLSPSRLWGWSADGLS
KYPPPFPSPLSSTPAAPSLKTLRSAYSPSMLEYDTENLNTDQIYSSLRGVTEAIQNFSFR
SQEDLMEPGRGKREDTPGVGTASHSGADVVEGPGGRTALDNKTSLLNTPSPRSFSGPRVR
DYNPYNYSDTISAYDKAALRETVYEDDVEQLRDGRQECGGENKMLHTKNSSPAEQLGLVG
ELLKELSNPSERPEERRGALVELLKIAREDSLAVWEEHFKTMLLLLLETLSDQDHTIRAL
ALRVLKEILRNQPARFKNYAELTIMKTLELHKDSHKEVVRAAEESASTLAGSIHPEQCIK
VLCPIVQTADYPINLASIKMQTKVIERITKESLHQLLPDIIPGLLQGYDNTESSVRKASV
FCLVAVYSVIGEELKPYLAQLTGSKMKLLNLYIKRAQTSTSNSSSSSDISSY
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atggagtggaatatggagtactgtatggagcaggttatgcagaaggacctgggtcggaga
ctacaggtgggccaagacatcatagactccatcctggacaaggacaagtcccaggacctg
gagcaggaccagaccatgctggacagaatggtggatggtgtcgctaccaactgggtcaac
tccagcaatttcaaggtggctttgttgggaatggaaatactgacagctttggtaacaaga
ctacaggaacggtttaggacacagattggaactgttttgccgagtttgatagatcgatta
ggcgactcaaaggaccaagtcagagaccaggaccaagctcttctactaaagatcatggac
caagctgctaacccacagtatgtatgggaccgaatgttaggaggattcaaacacaagaac
aacaggacccgggagagtgtctgcatttgccttatcgccacgttaaatgtatatggagct
caaggcttgaccctcagcaaaattgtcccccacatatgtaatcttttaggagaccctaca
agccaggtgcgagacggggccatgaactgtcttgttgaaatctacagacacgtcggggag
agggtgcggatggacctggggaaaaagggactgccacagtcacggttgaatgtcattttc
agtaaatttgatgaagttcaaagatcggggaacatgatcctgtcccctgtctcagataag
aactatgatgatgatgattcggtggacggggggcggtcctcctcttctaagggcccctcg
tcagggaagaaggcagtgagcatggggtcgttccgtaggcccagctctgcttccagcacc
aaatcaacagggagagatggtcctagtgcggctgctgcaggggctgtggatgaggaggac
ttcatccgtgccttcgaggaagtgtccactatggaacttttctctaacagggaaatggag
gacgccatgaccaagatcagggaggtgctggctgacgacaaacgagactgggagcacaga
gtcactgcgttgaagaagatgcgttctctgctcctggcgggagcggtggagtttgacggt
ttctcccagcagctgcgtctcacggaggcagccttcaagatgtcctctaaagacctgcgc
tctcaggtggtcagagaggcttgtatcactctgggccacctgtcctacatcctggggaac
aggtttgaccactgtgcagagtccatcatgcccactctcctaaccctggtctctaactcg
gccaaggtcatggccacatccggcatcgctgtcatacgactcatcatcaggcatacacac
taccctcgtctcattcctatcgtgaccagcagctgccagtcgaaatctgtggccgtaaga
aggcgctgttttgagttcttggacctcctgctgcaggagtggcagaccaactctctagag
aggaatgtagctgttctgacagagaccatcaagaaaggagtccatgatgcagactccgag
gccagatcagtggccaggaagtgctactggacgttccacggccacttcagccgggaggcg
gagcagctgttccaggctctagagtcgtcctatcagaaggctctccagtcccacatgaag
agttctgacagcatcctgtccctccctgcctcagaccgctcctcctcctcctcacaggag
agcctcaaccgccctcagtctgccaagagctccatgggaaacaccgtgaccaggacgaaa
gcggctccctccagaggtccctccaccccgggctctctccagcgttcccgtagcgacgtg
gacgtaaacgctgctgccaccgctagtgccaaaaccaggatgactcccgtgcccgcctcg
cccgccccattcagcgctgcctcggctctgccacccggctcctatgcctctctagacaac
acacctggtaactttagaccagtgggccgtgtgcgtaccaggagaacaagttcggggagc
ggtgtgggggcgagtccctcagtcatagacagtagggggaggagtcgagccaaaatggtg
tcagtgtctcaacctggcagtcgttctggctcccctggtcgtctcctgagccatacatac
ggcaggatctccagggccactgcagggacaacaccagcagaaaggaggcctaaagtcccc
cgcagccatggctgcagccgagacaccagtccagacagatcaggcctggcgaggagtcgt
atcccccggcccagcatgagtcagggctgcagcagggacacctctagggagagcagccga
gataccagccccgctcggggattctctcctctggcatccagacgtgtctcccgctccacc
agtgctctccactcggctgagtctgtgggccactcagagcgtctaggtctggcccaccag
gcccgtatctcagcctctgtcaacgccatgaggatcctcaacactgggaccgaggtggag
gcagctgtagccgacgccctgttactaggcgacgccaggaacaacaagcggcggccagtc
agacggcggtacgagtccccggggatctactcagacgacgacgctaacagcgatgccagc
agcgcctgctctgagcgctcgtatggctcgcggaacggcggccccccccactacatgaga
cagacggaggacgtggccgaggtgctgaaccactgtgccagttccaactggtctgagagg
aaggaggggctgctgggactacagaacctgctcgttagccagagaattctcagtcgtgtg
gagctgaagcgattgtgtgagatcttcacaaggatgtttgctgacccacacagcaagcga
gtgttcagcatgtttctggagaccctggtagactttatcaccctacacagagaggacgtg
caggactggctgtttgtcctgctcacccagctgctgaagaagatgggagctgacctcctg
ggttcagtacaggccaaggtccagaaggctctggacgtcaccagggactcattcccattc
gaccagcagtttaacatcctgatgcgtttcatcgtggaccagacccagacccccaacctg
aaggtcaaggtggccatcctgaggtacattgagtgcctggcccgtcaaatggaccccgca
gactttgtcaactccagcgagacgcgcctggccgtctcccgcatcatcacctggaccacg
gaaccaaagagctccgacgtccggaagagcttccaccatagctgggcaggtgaggagttg
tcaggcaggcccagcaccaccgtagcctctctacctggagaggggaacgtggaggagagg
tgcaagcaggcggctcaggtggttctgatcgccttgtttgagctgaacaccccagagttc
accatgctgctgggggccctgcccaagaccttccaggacggagccactaaactgctgcat
agccacctgcggaactccagcaacaccagagtggcttctcccagtagcaccatgggacgt
actcctcccccacctcgccaccccagcagtcgcagcagccccctcacctctcccaccaac
tgctcccatggggggctctctcccagccggctatggggttggagtgctgatggcctgtca
aagtacccccctcccttcccttctcctctctcctccacccctgctgccccctccctcaag
accctacggagtgcttactctcccagcatgttggagtacgacacagagaacctgaacacc
gatcagatctatagctccctgcgaggcgtcactgaggccatccagaacttcagcttccgc
agtcaggaggacctcatggagccgggcagaggcaagagagaggacacgccgggtgttgga
acagcatcacactctggtgccgacgtggtggaggggcccgggggtcgcacggccctggac
aacaagacctccctactcaacaccccctccccccgttccttctccggcccccgggtccgc
gactacaacccctacaactactctgacaccatcagcgcctacgacaaggctgccctgaga
gagacggtgtacgaggacgacgtggagcagcttcgagatggccgccaagagtgtggtgga
gaaaacaagatgctgcacaccaagaacagttcccctgcggagcagctgggactggtgggt
gagctgctgaaggagctgtctaaccccagtgagaggccagaggagaggaggggagccctg
gtggagctgctgaagatagcccgggaggacagcctggcagtgtgggaggaacacttcaaa
accatgctgctcctgctgctggagactctgtcagaccaagatcacaccatccgggcactg
gcgctacgagtgctgaaggagatcttacgcaaccagcctgcccgcttcaagaactacgca
gaactcaccatcatgaagaccctggagctacacaaagactcccacaaagaggttgtgcgg
gcagcagaggagtccgcctccaccctggccggctccatccacccagaacagtgtatcaag
gtgctgtgtcccatcgtccagacggctgactaccccatcaacctggcttccatcaagatg
cagaccaaggtgatcgaacgcatcaccaaggagtccctgcaccagctgctgcctgacatc
ataccaggactactgcagggatatgacaacacagagagcagtgtgaggaaggccagtgtg
ttctgtctggtggctgtctactctgtcattggtgaagagctgaagccctacctggcccag
ctcacaggaagcaagatgaagctgctgaacctgtacataaagagagcccagacgtccacc
agcaacagtagcagctcctcagacatctcctcatactaa
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