Oncorhynchus mykiss (rainbow trout): 110527634
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Entry
110527634 CDS
T07259
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04010
MAPK signaling pathway
omy04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110527634
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
110527634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110527634
Transcription factors [BR:
omy03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
110527634
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHLD2_C
RHD_DNA_bind
SHLD2_OB1
RHD_dimer
Ank
OB_SHLD2_2nd
Ank_2
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
110527634
NCBI-ProteinID:
XP_036845714
Ensembl:
ENSOMYG00000002188
LinkDB
All DBs
Position
1:complement(67575054..67593740)
Genome browser
AA seq
1727 aa
AA seq
DB search
MTDKPKIHVFMGAPPLTPVSDVDEGKSGQWRTMELCWQGGRLRAREDEGGIHGSDGRGEI
DASSEPGELLSTSKHGTSLQGPETQTGFPLQREPGCKETTQAGLAPLASSTPQNEQTVVN
DEDMCSESVKEYLDSCFPAGQPDPGPESAPERAGIQSDPAPAQSVSVETEYLSAWTLSQA
LLLRGRLGGQPETSPVKTRLPQTPPKSTPSTFTSSPELYSPATPTQSPRERGQGGTQQGS
MELFYEPLLSQRQEEGGVILEATADGVLCSQRNPMGNKEVGVVSKSPLPSPRSPVNTSPE
PPAPKRSKVSPTIDRTDQSSDQTTVKGCVTSQAHTTLARCGTQGVRYSILVAVVHPCHLK
EIRVRSGASAGSCIPLASVVVTDQSEVEMKVVLWRRAAFWALTVYSGDVLLITGVMVNED
KWRGETVLQSSYSSKLLNLGQVTGSSSPLVPQNVNGRTLRSLCGYLREKRPLLVSLPPRV
PQDPNTIAHARLRTLRPDTLVHALLRITHTEMITGWRAEAEGTSRVGGVLKAVLTVEQGD
GQQGAVVLWGAALTWLQRINRNKDAVWVFRLLLVRESMTTGLLELHSTPWGSCEPLFPDD
TRALEFYRPGPAKHTSTSLEIDLHTLLSQKYTGDVELRVHVTAFQFQGSPSQNALQRMDS
DTHLESILDTVSGDITFTGCGRCAAELDTDDNGIYCPCYPCLPHTGVRRYYRPVILTVKN
GESQVCVQVPPVLLQKILLDTPPDKLSKTVAPGSDVRLVQVVAERIYSLLSIPRRTFLLT
VRSHFLCDENSVPTAQDFLLLDFHDPKSYIIIYDPLTGIMSEALRMDEAQYSMKMIENEL
MMNLSTYEFMPPVEVKSEPYIPETVHGPYIQILEEPKQRGFRFRYECEGPSHGGLPGASS
ERNRRTYPTVKVSNYVGIARVEVQLVTHSDPPQVHAHSLVGRHCCTESGKCSVDVGPNEL
TAQFSNLGILHVTKKGVGEVLFKRLRDEKRRQRGQHYHFTDAEEQAILREANELGRIMDL
NIVRLKFTAYLQDSNGGFSRALKPVVSNPIFDSKSPNASNLKISRMDKTSGSVLGGDEIF
LLCDKVQKDDIEIRFYEEDGSWEAFGDFSPTDVHKQYAIVFKTPPYHSTEIDRSVTVFLQ
LKRKKVGDCSDPKQFTYVPQIQDKEEVQRKKQKPLPYNDPWRGPLGGAGGAGRGAGGPGG
AGFQFNQQMNGSGWMGGGFTCFGGGGAQMSGTTAQAEGTQQQAGGMAKQMPGQTPGQTAS
PPLQQQLFQIAATLQSRATRMTKQTAGALLQYCTTGDVRVLLAMQRHLCGVQDENGDTPL
HLAIIHQQSAVIQQLVHTLLTIQQRKVLDKLNHLSQTPLHLAVITRQVKVVDVLLRAGAD
PTLLDRDGRTPLHLAALAGDDVTLRVLLGHLGERYNHLVNMADYHGLHPLHLAVRKGGER
CLRLLVGSGAKINDPERGSGCSALHLAVRENLLKVACTLITELKADVNMCTFGGNTPLHL
AASQGSPTLCSMLIAAGADKNLENDEPLFLSSSSSDEEQEDGPIRDFRELQIQQQPTIPP
PLGKEQVNPRKRPATGHTPFDLTKCQKVRDLLDTRQRPKSSQHSSKKPKPNSMDESEQLD
SETLHKLCELLSLGDVPWRQLAEKLNMLSLAHLYQESPSPCYKLLENYKLGGGPVEGLVE
ALQSLGLTEGVRLLRRAELREDKQNTDQTVDSGFGSQPMDEPALANQ
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaaacccaaaattcatgtgttcatgggtgcccctcccctcacacctgtgtct
gatgttgatgagggaaagtctggtcagtggaggaccatggagctctgctggcaggggggc
agactgagggccagggaagatgagggtgggatccatggaagtgacggtcgaggtgagatt
gacgcttcatcagagcccggagagctgctcagtaccagcaagcacggtaccagtctccaa
ggtcctgagacccaaaccggatttcccttacagagagaaccaggctgtaaagagacaacc
caggccggcctggcccctttggcgagctcaactccccagaatgagcaaacagtcgttaat
gatgaggacatgtgttctgaatcagtgaaggagtatctggacagctgcttccctgccggg
cagcctgacccagggcctgagtctgcccctgagagagcaggcatccagtcagatccagcc
cctgctcagtctgtgtctgtggagacggagtacctcagtgcatggacactcagccaggcc
ctgctcctgagaggaagactggggggacaaccagaaaccagccctgtgaaaaccagactt
ccacaaacgccacctaaatccacaccatccactttcaccagctccccagagctgtacagc
ccagccacccccactcagtcccccagagagcggggccaaggagggacccagcagggctcc
atggagctcttctatgagcccctgctgagccagaggcaggaggaaggaggggtgatactg
gaggccactgctgatggggtgctctgctctcagcgtaacccaatggggaacaaagaagtg
ggtgtagtctccaaaagccctctcccatcacctagatctcctgtaaatacctcaccggaa
cccccagcccctaaaaggagtaaagtctcccccacaatagacagaactgatcagtcatca
gaccagactacagtgaagggttgtgttacttcccaagcccacaccaccctggctagatgt
ggcacccagggagtgcgttactccatcttagtggccgtggtgcacccgtgtcatctgaag
gagattagagtgaggtccggggcgtctgctggctcctgtatccccctggcctctgtggtg
gttactgaccaatcagaagtggagatgaaggtggtcctgtggaggagggcagcattctgg
gcccttactgtgtattctggagatgtgctgctcatcactggtgtgatggtgaatgaggac
aagtggagaggagagacggttctgcagtcgtcgtacagcagcaagctcctcaacctgggc
caagtcactggcagcagctcacctctagtcccacagaatgtgaatggccggacactgagg
tctctgtgtggttacctgcgtgagaagcgtcccctgctggtgtccctccctcctcgcgtc
cctcaggatcctaacaccatcgcccacgcccgtctcaggaccctgagacctgacacgctg
gtgcatgccctgcttcgaatcacacacactgagatgatcacagggtggcgagccgaggca
gagggcacgtccagggtaggaggagtactgaaggctgtgctgactgtagagcagggggat
ggacagcagggggcagtggtgctctggggagctgccttgacctggctgcagcgtatcaac
aggaacaaagatgcagtgtgggttttccgtttgctcctggtaagagagagtatgacgaca
ggcctgctggagctgcactccaccccctggggctcctgtgagcctctcttccccgacgac
acgcgggcgctggagttctaccggccaggccctgccaaacataccagcaccagcttggag
atagacctgcacactctcctgtcccagaagtacactggtgatgtggaactgagagttcac
gtcacagctttccagtttcaaggcagcccctcccagaatgcactgcagcggatggacagc
gacacgcatctggagagtatcctggacacagtgtcaggtgacatcacgttcacaggttgt
gggcgctgcgctgccgaactggacacagatgacaacgggatctactgtccctgctacccc
tgcctcccccatactggagtacgacgctattacaggccagtaatactgacagtgaagaat
ggggaaagccaggtgtgtgtgcaggtgccacctgtcctgctgcagaagatcctgctcgac
actcctcctgacaagctgagcaagacggtcgctccagggtcagatgtgaggttagtccag
gtagtggctgagaggatttattcattgctgtccattcccagacgcaccttcctccttacc
gtccgcagccacttcctgtgtgacgagaacagcgtccccactgcccaggactttctactg
ctggattttcatgaccccaaatcatatatcatcatctatgatccactgacaggcatcatg
tctgaagcactaagaatggatgaagctcagtacagcatgaaaatgattgaaaatgagctg
atgatgaacttatcgacttatgagttcatgccacctgtggaggtcaagagtgagccctac
atacccgagacagttcatggaccctacattcaaatacttgaggagcccaaacagagaggc
ttcagattccgctatgagtgtgagggtccgtcccacggtgggctcccaggggcctccagc
gagaggaacaggagaacctatcccactgtcaaggtgtctaactatgtggggatagccagg
gtagaggtgcagctggtgacccactctgaccccccccaggtccacgctcacagtctggtg
gggaggcactgctgcacggaaagtggaaaatgcagtgtggatgtgggccccaatgaactc
acagcacagttcagtaacctgggcatcctccatgtcacaaagaaaggggtgggggaagtg
ttgttcaagagactgagagacgagaagaggagacaaagggggcagcactaccattttact
gatgcagaggaacaagccatattgagagaagccaacgagctgggcaggatcatggacctg
aacatagtgaggttaaagttcacggcctacctccaggacagtaacggagggttctctagg
gccctgaagccagtggtctccaatcccatctttgacagcaagtcacccaacgcttccaac
ctgaaaatctcccgtatggataagacctctgggtctgtgctgggaggggatgagatcttc
ctactgtgtgacaaagtacaaaaagatgatattgagatccgcttctatgaggaggatgga
agctgggaggcctttggtgacttctctccaactgatgtccacaagcagtatgccatcgtg
tttaagacacccccgtaccacagcacagagatcgatcgttcagtcactgtgttcctccag
ttgaaaaggaagaaagtgggagactgcagcgaccccaagcagttcacctacgttcctcaa
attcaagataaagaggaggttcaacgtaagaagcagaagcccctcccctataatgaccca
tggagagggcctctgggaggggctgggggggcagggagaggtgccggaggaccaggagga
gcaggattccagtttaaccagcagatgaatggatcagggtggatggggggtggattcact
tgttttgggggtggtggagcccagatgtcaggcaccactgcccaggctgagggtacccag
cagcaagctggagggatggccaaacagatgccaggacagacgccaggacagacagcctca
ccaccactacaacagcagctcttccagattgctgctactctccagagcagggccactcgg
atgaccaagcagacagctggggctctcctacagtactgcacaactggggacgtccgggtc
cttctggcaatgcagagacacctatgtggggtccaggatgaaaacggagacacgcctttg
cacctggccatcattcaccagcagtcagctgtgatccagcagctggttcatacactcctc
accatccagcaacgcaaagtcctcgacaagctcaaccacctcagccagactcctctccat
ctggcggtgatcaccaggcaggttaaggtggtggatgttctcctgagagccggggctgac
cccaccctgctggaccgggacggccggacccccctgcacctggcagcgctggccggggac
gacgtcacactcagggtcctcctggggcacctaggagaacgttacaaccacctggtcaac
atggccgactatcatggtctccatcctctccatctggctgttcgcaagggaggagagcgc
tgtctacgtctgctggtggggagcggggctaagatcaatgaccccgagcgggggagtgga
tgctccgccctccacctggctgttagagagaacctcttgaaagtggcctgcactctcatc
acagagctgaaagcagacgtaaacatgtgtacgtttgggggtaacactcctctccatctg
gccgccagtcagggctcccccactctctgctccatgctcattgctgcaggagccgataag
aatctggagaatgatgagccgctcttcttaagctcctcttcctctgatgaggagcaagag
gatggaccaataagagatttcagagagttacagatccaacagcaaccaaccatcccacca
ccgttggggaaagaacaagtcaaccctcgtaagagaccagcaacaggacatacacccttt
gaccttactaaatgtcaaaaggtgagagaccttctagacaccagacagagacccaagtcc
agccaacactcaagtaaaaagcctaaaccaaacagcatggacgaaagtgagcagctagac
agtgagacgctccataaactgtgtgagctcctcagtctgggcgatgtgccctggagacag
ctggcagagaaactcaacatgctctccctggcacacctgtaccaggagagtccctctccc
tgctacaaactgctggagaattacaagttgggtggcggtccagtggaaggactggtggag
gctctgcagtctctgggtctgactgaaggagtgcgactgctgagacgggctgagctgaga
gaggacaaacagaacacagatcagacagtggacagcggctttgggagtcagccaatggat
gagccagccttggccaaccagtga
DBGET
integrated database retrieval system
