Oncorhynchus mykiss (rainbow trout): 110527654
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Entry
110527654 CDS
T07259
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110527654
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110527654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Chromo_MIT1
Pea-VEAacid
Motif
Other DBs
NCBI-GeneID:
110527654
NCBI-ProteinID:
XP_036839042
Ensembl:
ENSOMYG00000004581
LinkDB
All DBs
Position
7:complement(32075882..32174536)
Genome browser
AA seq
3074 aa
AA seq
DB search
MTEKMRFSCGFMGPVLWWGGWEKAQCLATDALTGECCPDAVKVKRNMKIQKKDKQMSTTH
LQKYTLATAASNATAQNAQTPFPRGTLGSKDQIRDLGGGQTNHCMANSKHPRMGEASTSS
ISPCAPSSPLNSEEDDGGGGRWAKKKKQKKKDKWGEPGSAWQHKGLERDMKPNKKREQKE
GKELLLLRNFKEPRKVKAPKEVKRGRKPKVQALPLPHSECKSAPSPPRQRGRKPREQVFQ
GPVPAEKKKKGKRKSEAVVQEAVERDNVAFLSALAIRGEESIDPLDNTKRRSGRQVKRRK
YNEDLDFKVVDDDGETIAVLGTGRIPALNAATLTWQAEEPPEDEANIIEKILSVRTVKKE
ASPEDTTEESEEFYVKYRNFSYLHCKWATLEELEKDPRIQQKIKRFRTKHAQMKHIFVEP
NEDLFNPDYIEVDRVLEVAITTDTETGEEVTHYLVKWCSLSYEEATWELQEDVDPVKIRE
FEEIKRIPEFKFVERPQPDKWQKLDKSKDYRNGNQLREYQLEGMNWLLFNWYNRKNCILA
DEMGLGKTIQSITFLFEMFSMGLRGPFLIIAPLSTITNWEREFRTWTEINVIVYHGSQIS
RQMIHQYEMYHKDQQGNVVLGGYKFHGVITTFEMIMADCPELKKIHWRCVVIDEAHRLKN
RNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPLQFPSESLFLEEFGDLKTE
EQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNMQKKYYRAILEKNFTFLAKG
ANQHNMPNLINTMMELRKCCNHPYLIKGAEEKILDSFRKTHSPDAWDFQLQAMIQAAGKL
VLIDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRF
CKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVY
RLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGAQQMTKIEVEDLLRKGAYGALM
DEEDEGSKFCEEDIDQILQRRTQTITIETEGKGSTFAKASFVSSGNRTDISLDDPNFWQK
WAKITELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPCRTRRF
SERNRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWQLAEHDMEVLCRALLVYCVRHY
MGDDKIKSFIWDLITPAKDGHKQDLQNHSGLSAPVPRGRKGKKLKNQLSVPEMKHADWLV
NCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGETAAQSLEGIHASKLEVALP
DIDYIEIPAGWWDAEADKSLLLGVHKHGYERYNAMRADSELCFLERVGMPDVTALSAEQS
GGEVVADLTDSACKSEDVKDDPECNQEEGGVEKVDNKDETSSSNDAMDKHDSVGQDTLSV
EMVQETFGQEGMELKGRPLWPAGPALTARLRRLITAYQRFMRREPLRHDFLLPEGLGAGL
GTMSWQLGEEIRRCTVAAAEPDPLFLEWQRRWVMTSEQRWTRREQADFYRTVSSFGVVYD
PEKKAFDWSPFRSFARLERKTDESLERYFSSFVSMCRTACRLPPRKDEGPLDHNLFVEPI
TEERAARTLYRIELLRKVREQVLRHPLLGPRLQLCRPSLYLPVWWECGKHDRDLLIGAAR
HGLSRTDYYILNDPQLSFLEAHRNYVQKENHQGYQPSVHHAGMAPSAHHHPCCIYETGLG
QCHSPQPLEYGHQAIPSSIHFHSHPNVHGHPPEIVGTGPGGSLGMVSGPREGFLVCPPLD
ESLELASLQHEGLASDSLHGKSTKEAFNGFPFNSAQGGQSMLNSYGVQGELTSEQSADMD
PIISGKLRSDVLVGSSEENGLMAPLLELEQELQAPWESTDHTGTADVVGMFNEADPILGA
PALDTEFLDTEEQTGDGGREDGAGGVLDDCLGIPSSRSDPGEPLPSSFTLFKNIDVSEEE
PAAEHTNLSASPLPSYTPPPHLSLSHMTLHPHHHNQGDVEQPEEKLSDSDTVAHVPSPDE
REAERDVSFEFDKEEMSVDSPSLVGLEQGLDISCIPCEDTLQEEPCYGMGMGSPVESCQV
ALERPGEETLERDMPLGLVEEGLLEGQAEEPLEISPMDSQEEDPVDGPLEDFGKDKAPEG
PFTGPLEQYDVEPEAAFEGPAEAESTLSEHTLPTVDATYTLPPSFSVPRPQPEPPLSPRV
AGVSQIKLEFPLDPESSESKSDILEPDSTVLTPKLEQTEVLLEVKDKIKEERPQTPGNEV
DSYVEVAQFAVPMSMCEMPDSLQDAREPTIAQLLQEKALYSFSEWPKDRVIINRLDSICH
AILKGKWPSSSQQYDSPSSLANTCVPNIVHQRAGFISARVQPSQSLNFNIPAPPVTRLPK
YKSRDAGECSQGGWRLTSLPLLQERLVAPPYLPELKRGRRAFEYKAEVLSKQCHTGENMP
VTVSNRGGALLLNGWQEAAMDLSKAGDLGIGGDAAATVGHMSHQVHPVARKLPAMSAMQG
SVGKDMAGILQAGLIHPVTGQIVNGNLRCDDAIMRRRRGRRRNMETVDIGFVKSRGMHVQ
EKQGRVEVTSHSAVSSTSSPPECPPGTSTPTLSEVVAIDREAANNGLMEWLRQNPNCSME
VPTFAPSPGSAILHSFVERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRSTGRRLGGAMA
PAIKELSRWLDANTEYCVAPDWADVVKHSGFLPEGKFTRILTEPVCRDQGPRRRGRRPRS
EMPKPLLSESPMGPLCMNGGLIGSMDLVSLQNLRNVQGIPLTGLMGFPHGFAVSAGEDAK
NGLSMLPMMLHGVHGTPHMFSVQGLMGLPPTCSASTSSSTAAVTTTVASSSMASSPSRGP
GQASSSTGAEGSGIQSGTERKREEKQQGVMGSHSIAAITTTTATSSGSHQAFNPFLIPGM
SHGLLYPHMFLPHGGVMALPGMPPADSSSSPKMKKKRTKEEGVVVGVVEAGSHSHLQTDS
GPPKKHSDGQTGESTADQAGPEDREQTEDSIQEEGTGHDSHDPPEVNPKKSVEEERGTMV
ISLMEEESVSRGAE
NT seq
9225 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaaaatgaggttttcgtgcggttttatgggtcctgtgttgtggtggggtggt
tgggagaaagcgcagtgtttggcaactgatgctctgaccggtgaatgttgcccagatgca
gtgaaggtgaagagaaatatgaaaatacaaaagaaggacaaacagatgtccaccacccac
ttacaaaagtacactctagctacagcagcctctaatgcaactgcccaaaatgcacaaact
ccatttcccaggggtaccctgggctctaaggaccagatcagggaccttggtggtggtcag
accaatcactgcatggccaactccaagcaccccaggatgggcgaggcgagcactagctcg
atcagcccctgcgccccctcgtcacccctcaacagtgaggaggacgatggagggggcggg
cggtgggcgaagaagaagaaacaaaagaaaaaagacaagtggggcgagcctggcagtgcc
tggcagcacaagggcttggagagagacatgaaaccaaataaaaagagggagcagaaagaa
gggaaggagctgctgctgctgcgcaatttcaaggagcccaggaaggtgaaggcaccaaaa
gaggtgaagagagggagaaaacccaaggtgcaggccctgccccttcctcattcagaatgc
aagagcgccccctctcctcccagacagaggggccgcaaacccagagagcaagtcttccaa
gggccggtcccagcggagaagaagaaaaagggcaagcggaaaagcgaggcagttgtccag
gaggctgtggagagagataatgtggccttcctgtccgcgctggccatcaggggagaggag
agcatcgatcccctcgacaacacgaaacgtcgctcggggcgacaggtgaagcgcaggaag
tacaatgaggacctggacttcaaggtggtggatgacgacggggagactattgccgtgctg
gggacgggccgtatccctgccctcaacgctgccactctcacttggcaggctgaggagccc
cctgaagatgaggcaaacattattgagaaaatcctgtcggttcgaactgtgaagaaagag
gcgtcccctgaggatacaactgaggagtcggaggagttctatgtcaagtacagaaatttc
tcctacctgcattgtaaatgggcgacattggaggagttggagaaggaccctcgcatccag
caaaaaatcaagcgcttcaggactaagcatgcccaaatgaagcacatatttgttgagccg
aatgaagacctctttaaccctgactacatagaagtggatagagttttggaggtggccatc
actacagacacagagacaggagaggaggtgacacactacctggtgaagtggtgctccctg
tcctatgaggaggctacatgggagcttcaggaagatgtggacccggtgaagattcgggag
tttgaggagatcaagagaatccctgaattcaaatttgtggaaagacctcagccagacaag
tggcagaagctggacaaatccaaagactatcgaaacgggaaccagctgagagagtaccag
ctggagggaatgaactggttgctcttcaactggtacaacaggaagaactgcatcctggct
gacgagatgggccttgggaagaccatccagtccatcaccttcctctttgagatgttctcc
atgggcctgcggggacccttcctcattatcgcccccctttccaccatcaccaactgggag
agggagttccgcacctggactgagatcaacgtcattgtctaccacggcagccagatcagc
cgccagatgatccaccagtatgagatgtaccacaaggaccagcagggaaatgtagtgttg
ggcgggtacaagttccacggagtgatcaccacctttgagatgatcatggccgactgcccg
gagctgaagaagatccactggcgctgcgtggtcatcgatgaggcccaccgcctcaagaac
cgcaactgtaaactcctggagggcctcaagctcatgaacctggaacacaaggtcctcctg
acaggcacccccctgcagaactcagtggaggagctctttagtctgctcaacttcctggag
cccctacagttcccctcagagagcctcttcttggaggagtttggagatctgaagactgag
gaacaggtgaagaagcttcaggccatcctgaagcccatgatgctgcggcggctgaaggat
gacgtggagaagaacctggcgcccaaggaggagaccatcatcgaggtggagctcaccaac
atgcagaagaagtactaccgggccatcctggaaaagaacttcaccttcctggccaagggg
gccaaccagcacaacatgcccaacctcatcaacaccatgatggagctgcgcaagtgctgc
aaccacccctacctgatcaaaggtgcggaggagaagatcctggatagcttcaggaaaacg
cacagccctgatgcttgggacttccagctccaggccatgattcaggcagcggggaagctg
gtgcttattgacaagctgctgccgaagctgattgctggcggccacaaggtgctggtcttc
tcccagatggtgcgctgcctggacatcctggaggattacctcatccagaggaggtacacc
tatgagcgcatcgacggcagagtgcggggtaacctgcgccaggcagcgatcgacagattc
tgtaaggtggactcggaccgctttgtgttcctgctgtgtacccgtgctgggggcctgggc
atcaacctgaccgctgcagacacctgcatcatcttcgactcggactggaacccccagaac
gacctacaggcccaagctcgctgccaccgcatcggccagagtaaagcagtgaaagtgtac
aggctgatcaccaggaactcctatgagagggagatgtttgataaagccagtctgaagctg
ggtctagacaaggctgtgctgcaggacattaatcgaaagggcagcctcaatggggcgcag
cagatgaccaagattgaggtggaggacctgctgagaaagggggcgtatggcgcactgatg
gatgaggaggacgagggctccaagttttgcgaggaggacatcgaccagatcttgcagcgc
cgcacccaaactatcaccatcgagacagagggcaagggctccaccttcgccaaggccagc
tttgtgtcttctggaaacagaactgacatttccctggacgatcccaacttctggcagaaa
tgggccaaaataaccgagctggagattgactccaaagcagagaaggagagcctggtgatt
gatacacctcgtgtgaggaagcagactcgtcactacaactcgttcgaagacgacgagctg
atggagttctctgagctggacagcgactcagaagagaggccctgtcgcacccgccgcttc
agcgagaggaacagacgctacctccgcgccgaatgcttccgcgtcgagaagaacctgctc
atattcggctggggtcgctggaaggacatcctaacccacgggcgcttcaagtggcaactg
gctgagcatgacatggaggtgctttgccgggcactactggtctactgtgtgcgtcactac
atgggcgatgacaagatcaagagctttatctgggacctcatcacacctgccaaggatggc
cataaacaagacctgcagaaccattctggcctgtccgccccagtgcccaggggacgcaag
ggtaagaagctaaagaaccagctgagcgtgcctgagatgaagcatgcagactggcttgtc
aactgcaacccagaggtagtgctacaggacgacagctacaagaaacacctcaagcagcac
tgcaacaaggtacttctgagggtgaggatgctgtactacctcaaggcggaggtcctggga
gaaactgctgctcagtccctggagggcatccatgccagtaaactggaggtggcactccct
gatattgactacatcgagatcccagcaggctggtgggatgcagaggcagataagtctctc
ctcttaggagtgcacaaacacgggtatgagcgatacaatgccatgcgggccgactcagag
ctatgcttcttggagcgggtgggcatgcctgacgtcacggcgctctcagccgagcagagt
ggaggagaggtggtggctgacctcactgacagtgcttgcaaaagtgaggatgtgaaagac
gatcctgaatgcaatcaggaggagggaggagtggaaaaggttgataataaggatgaaacc
agctccagtaatgatgcaatggacaagcatgacagtgttggtcaagacacactctcagtg
gagatggtccaggagacctttggccaggagggcatggagctaaagggtcgccctctgtgg
ccggccggccctgcccttacggccaggctacgtcgcctcatcacggcctaccagcgcttc
atgcggcgcgagccgctgcgccacgacttcctgctacctgaagggctgggggcaggcctg
gggacgatgtcctggcagctgggggaggagattaggcgttgcacggtggccgccgctgaa
cctgaccctctcttcctggagtggcagagaaggtgggtgatgacgtcagagcaaaggtgg
acacggcgtgagcaagcagatttctaccgcaccgtgtcgtcgttcggtgtggtgtacgac
ccggagaagaaagcattcgactggagtcctttccgctcctttgcccggttggagaggaag
accgacgagagcctggagagatacttcagtagctttgtgtccatgtgccgcactgcctgc
agattgccccccaggaaggacgaagggcctctggaccacaacctgtttgtggagcccatc
acagaggagcgagcagcacgtaccctctaccgtatcgagctgctgcgcaaggtcagggag
caggtgctgcgccacccactgctgggcccgcgactgcagctgtgtcggcccagcctctac
ctgcctgtgtggtgggagtgtggcaagcacgaccgcgacctcctgattggagcggcccgc
cacggcctcagccgcactgactactacatccttaacgacccgcagctatctttcctggag
gcccaccgcaactacgtccaaaaggagaatcaccagggctaccaacccagtgtgcaccac
gcaggcatggccccctcagcgcaccaccacccctgctgcatctatgagacaggcctcggc
caatgccactctccccagccgctggagtacggtcaccaagccatcccctcttcgatccac
ttccattctcacccgaacgtccacggtcacccgccagagatagtgggcacgggccccggt
ggcagcctaggtatggtgtctgggccaagggagggcttcctggtttgcccccctctggat
gagtcattggaactggcatcactgcagcatgagggcctggcctcagattccctccatggc
aagtctaccaaggaggccttcaacgggttccccttcaactcagcgcagggcggccagagc
atgctcaactcgtatggtgtgcagggggagctgaccagcgagcagtcggccgacatggac
ccgatcatctcaggcaagctgcgcagcgacgtgctggtgggctcctcggaagagaatggc
cttatggcccccttgctggagctggaacaggagctgcaggcgccctgggagagcactgac
cacacaggcacagcagatgtcgtgggcatgttcaacgaggccgaccccatcctgggggca
ccagcccttgatacagagttcctggacacagaggagcagacaggagacgggggaagggag
gacggagctgggggagtgcttgacgactgcctaggtataccctcatcccggagcgaccca
ggggagccgctgccctccagtttcacgctgttcaagaacattgacgtcagcgaggaggag
cctgctgcagaacacacaaacctctccgccagcccccttccttcctacaccccccctccg
cacctgtcgctgtcccatatgaccttgcacccccaccaccacaaccagggtgatgtcgag
cagccagaggagaagttgagtgactctgacactgtcgcccacgtgcccagccccgacgag
agggaggcagagagggatgtgtcctttgagtttgacaaagaggagatgtctgtggacagt
cctagtctggtggggctggagcagggcctggacatctcatgtataccatgcgaggacact
ctccaagaggagccctgctatgggatgggaatgggctctccagtggagtcatgtcaggtg
gctctagagaggccaggagaagagactttagaaagggacatgcccttagggctagtggag
gaagggcttctagagggacaggctgaagaacccttggagatatcgcccatggattcccag
gaggaggacccagtggatggtcctctggaagacttcggtaaagacaaagcaccagaagga
ccattcacagggccgttggagcagtacgacgtagaacctgaagcggccttcgaggggcct
gccgaagcagagagcactttaagcgaacacacactccccactgttgatgctacatatact
ctgcccccatccttctcagtccccaggccccagcctgagccaccactgtccccacgtgtg
gctggagtgtcacagatcaaacttgagttccctctggacccagagagctctgagagcaag
tcagacatactggagcctgacagcactgtcctcacgcccaaactggagcagacagaggtg
ctgctggaagtaaaggacaagatcaaggaggagaggccccaaactccaggtaatgaagtg
gacagctatgtggaggtggcacagtttgccgtccccatgtccatgtgtgagatgcctgac
agtctgcaggacgcgcgggagcccaccatcgcccagctgctgcaggaaaaagccctctac
tccttctccgagtggccaaaggatcgggtgatcatcaaccgcctggacagcatctgtcac
gccatcttgaaggggaagtggccctcctccagccagcagtatgactcccctagctctctg
gcaaacacctgtgtgcctaacattgtgcaccagagggctggcttcatttcagccagggta
cagccatcccagagccttaacttcaacatcccagcccctcctgtaacccgccttcccaag
tacaagtcaagagatgccggggaatgcagccagggaggctggaggttgacatccttgcct
ctcttgcaggagaggctggtggcgccgccctatttgcctgaactaaagcggggtaggcgt
gcatttgaatacaaggcagaggtgctcagtaagcagtgccacacaggggagaatatgcct
gtaaccgtgtcgaacagaggtggggcgctgctgctcaacggatggcaggaggcggccatg
gacctctccaaggccggggatctgggtattgggggcgacgcggcagccactgtaggccac
atgagtcaccaggtccaccccgttgcccgaaaactgcccgccatgagcgccatgcagggt
tcagtggggaaggacatggccgggatcctgcaggcaggtctcatccaccccgtcaccggc
caaattgtcaatggcaacctgaggtgtgacgacgcaatcatgcgccggaggagaggcaga
cggagaaacatggagacggttgacatcgggtttgtcaagagcagaggaatgcatgtgcag
gaaaaacagggcagggtagaagtcaccagtcattctgcagtgtcgtccacctcctcccca
cctgagtgccccccgggaacctccacccccaccctgtcagaggtggtggccatcgacaga
gaggctgccaacaatggcttgatggaatggctgcgacagaatcccaactgtagcatggag
gtgcccactttcgcaccgtctcctggctcagcgattctgcacagctttgtggagcggccc
aagcagaggcggcatcgctgtaaagaccccaccaagttggatgtcaactccctaacaggg
gaggagagggtgccagtggtccacaggagcactggccgcaggcttgggggtgctatggct
ccagcaatcaaggagctttcacgatggctggatgcaaatactgagtactgcgtggcacct
gactgggcagatgtagtgaaacactctggttttcttcctgagggcaagttcacccgcatc
ctcactgagcccgtgtgccgcgaccaggggccccgccgccgggggcgtcgtccccgcagc
gagatgcccaagcccctcctctccgagtctcccatgggcccgctctgtatgaacggcggc
ctgatcggcagcatggacctggtcagcctccagaacctccgcaatgtccagggcatccca
ctcacaggcttgatgggattcccccatggctttgctgtgtccgccggtgaagacgcaaag
aatggtctgagcatgctgcctatgatgctccacggcgtacacggcaccccccacatgttc
agcgttcaggggctgatgggtttgccgcccacctgctccgcttccacctcgtcctccacg
gctgcagttaccaccactgtggcctcctcctcaatggccagtagcccctctcgaggcccc
ggccaggcatcttcgagcacaggggccgagggctccggcattcagtctggcacagagaga
aagagggaggaaaagcagcaaggcgtgatgggcagccacagcattgcggccatcaccacc
accacagcgaccagcagtggcagccaccaggccttcaaccctttcctcattccggggatg
tcccatggactgctgtaccctcacatgttcctcccgcacgggggcgtcatggcgctgcca
ggcatgccgcctgcagactcctccagcagcccaaagatgaagaagaaaagaacaaaggag
gaaggggtggtggtgggggtggtggaggcaggcagccacagccacttacagacggacagt
gggcctccgaaaaaacacagtgatggccagactggggagagcacggctgaccaggctggg
ccggaggacagggagcagacggaggacagcattcaggaggagggcacgggacacgactcc
catgatcctccagaggtaaatcccaagaagagcgttgaagaggagagaggaacgatggtg
attagcttgatggaggaggagagcgtgtcaaggggggcagagtag
DBGET
integrated database retrieval system
