Oncorhynchus mykiss (rainbow trout): 110527925
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Entry
110527925 CDS
T07259
Name
(RefSeq) cadherin-4 isoform X3
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04514
Cell adhesion molecule (CAM) interaction
omy04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
110527925
04519 Cadherin signaling
110527925
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
omy04515
]
110527925
Cell adhesion molecules [BR:
omy04515
]
Cadherins
Major cadherins
110527925
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_FAT4_N
Ig_CLSTN
Fibulin_C
F59B103_C
NCMAP
Stevor
DUF5527
Motif
Other DBs
NCBI-GeneID:
110527925
NCBI-ProteinID:
XP_021465228
Ensembl:
ENSOMYG00000033922
UniProt:
A0A8C7T2K0
LinkDB
All DBs
Position
7:48470687..48714043
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AA seq
921 aa
AA seq
DB search
MNLGSVLILTCTLVVDTSWATKADQPPKPPCRPGFSESFYTVFVSRDLLQGQNILKVKFD
DCQHSKAVDFESSDPNFSVRPDGSVYAEQEVANLSDPVQFMVTARGGHDPHIWETTVKLA
LAGHPPSVPVSQIGVEDMIARAWDSNPRVIKFPRKHQRSSSANGLRRQKRDWVIPPINVP
ENSRGPFPQMLVRIRSDQDLEKGIRYSITGAGADQPPIDVYNIDPVHGKMFVTRPLDREE
RASYHLRAHAVDMNGNKVESPIDLYIYVIDMNDNRPEFQNQVYNGSVAEGSKPGTLVMQV
TANDSDDDTTANGMVRYRILSQTPHMPIPNMFTINSETGDIFTVAAGLDREKVSQYTIIV
QATDMEGNLNFGLSNTATALISVTDINDNPPELTARTFSGEVPENRVNVVVANLTVIDRD
QPHSPNWAAQYRIASGDPQGHFLIRTNPVNNDGMVTVVKPVDYEQNRAFMLTVIVSNKAP
LASGIQSSLQSSAGVTISVQDVNEPPVFPSNPKSIRFEEGVPAGTTLTVFAAQDPDLFIH
QTVRYSKLSDPANWLRINRTNGQITTMAVLDRESMYVRNNIYEATFLAADNGKSGSPPAS
GTGTLQIHLIDVNDNAPVLLPKEAQVCERASPRSRVNITASDADADPHVGPFVFELPSYP
PSVRRNWTASRISGDYAQLRLRIPYLDAGVYDVPIIVSDSGNPPLSNRSMIKVKVCPCDD
NGDCTTTGAVAAAGLGTGAIIAILICIIILLTMVLVFVMWMKRREKERQAKPLLIDPEDD
VRDNILKYDEEGGGEEDQDYDLSQLQQPEALDHIICKPTGVRRVDERPVIAESQYPIRPS
LPHPGDIGDFINDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSSSGDQDYDY
LNDWGPRFKKLADLYGGGDDD
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaggctccgttcttatactgacgtgcaccttagttgtggacacatcttgggcg
accaaggcagaccaaccacctaaacccccatgcagaccaggcttttccgagagcttctac
acagtctttgtctctagggatctactgcaaggccagaacattctcaaagtgaagtttgac
gactgtcagcacagcaaggctgtggacttcgagagcagcgaccctaacttcagtgtgcgt
cctgacggctcggtgtacgcggagcaggaggtggccaacctgtctgatccagtccagttc
atggtgaccgcccgcggaggtcatgaccctcatatctgggagaccacggtcaagctggcc
ttggctggccacccgccttctgttcctgtgagtcagattggagtggaggatatgattgca
agggcctgggactctaatcccagggttatcaagtttccacggaaacatcaaagaagctct
tctgccaatggtctgagacgacagaagcgagactgggtcatcccaccaatcaatgtgccc
gaaaactctagaggacccttcccacaaatgcttgtcagaatccgctcagaccaggacctg
gagaaagggatccgctacagcatcactggagcaggggcggaccagcctcccattgacgtg
tacaacattgaccctgtgcacggcaagatgtttgttaccagacccctggacagagaggag
agggcctcctaccatctgcgggcccatgctgtggacatgaacgggaacaaggtggaaagc
cccatagacctgtacatctacgtcatcgacatgaatgacaaccggccagagttccagaac
caggtgtacaacggctctgtggctgaaggctctaaaccaggcacgttagtgatgcaggtg
accgccaacgactcagatgacgacaccacagccaatgggatggtgcggtaccggatccta
tcccagaccccccacatgccaatccccaatatgttcaccatcaacagcgagacgggagac
atcttcacggttgccgccggcttggacagggagaaagtgtcccagtacaccatcatcgtc
caggccacggacatggaggggaacctgaactttggcctgtccaacacggccaccgccctc
atctctgtgaccgacatcaacgacaaccctcccgagctgaccgccaggacgttttcgggg
gaggtcccagagaacagggtgaatgtggtggtggccaatctgacagtgattgacagggat
cagcctcacagccccaactgggctgcccagtaccgcatcgccagtggagacccccagggt
cacttcctcatccgcaccaaccctgtcaacaatgacggcatggtcactgtggtcaagcca
gtggactatgagcagaacagggccttcatgctgacggtgatagtctctaacaaggcccct
ctggccagtgggatccagtcttctctccagtcttcagcgggggtcaccatctccgtacag
gatgtcaacgaaccccctgtcttcccttccaaccccaagtccatccgtttcgaggagggt
gtccctgcaggcaccacactcaccgtgtttgctgcccaagaccctgacctcttcatccat
cagactgtccggtactcaaagctgtctgacccagctaactggctgaggatcaacaggacc
aacggtcagatcaccaccatggccgtgctggacagggagtccatgtatgtcaggaacaac
atctatgaggccaccttcctggctgccgacaatggtaagtctggctctccccctgccagt
gggacaggcactctacagatacatctgatagatgtgaatgacaatgctccagtgctgttg
cccaaggaggcccaggtgtgtgaacgggccagcccccgctccagggtcaacatcacagcc
tccgacgccgacgctgaccctcacgtggggccttttgtgttcgagctgccctcctacccc
cctagcgtccgacgcaactggaccgcctcccgcataagcggtgactatgcccagctgaga
ctgaggattccctacctggatgcaggggtgtatgatgttcccatcatagtgtcggactct
gggaacccgcccctctctaacaggtctatgataaaggtcaaggtgtgtccgtgtgacgac
aacggagactgtactaccaccggagctgtagctgccgctggactggggaccggagcgatc
atagccatactcatctgtatcatcatactgcttacaatggtactggtgtttgtgatgtgg
atgaagcggagggagaaggagcgtcaggccaagcccctgttgattgacccagaggacgac
gtcagagacaacatcctgaaatacgatgaggagggaggaggagaggaggaccaggactat
gacctaagccaattgcagcagcccgaggctctggatcacatcatctgtaaaccaacgggg
gtgcgcagggtggacgagaggcctgtcatcgctgagtcccagtatcccatcagacctagc
ctgcctcatcccggagatattggagacttcatcaacgacggtctgagggcagcagacaac
gaccccacagccccgccctatgactccctgctggtgtttgactatgagggcagcggctcc
acggccggctctgtcagctccctcaactcctcaagctcaggggaccaggactacgactac
ctcaacgactggggcccccgcttcaagaagctggctgacctctacggcggaggagacgac
gactga
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