Oncorhynchus mykiss (rainbow trout): 110528005
Help
Entry
110528005 CDS
T07259
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110528005
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110528005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
PHD-1st_NSD
HDA2-3
PHDvar_NSD
HTH_CHD1_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110528005
NCBI-ProteinID:
XP_021465443
Ensembl:
ENSOMYG00000024504
LinkDB
All DBs
Position
7:complement(54998441..55036498)
Genome browser
AA seq
2057 aa
AA seq
DB search
MPGSLSNEDEGQEDMDFEDEIPDEDEDGQRNTVPLTPLDSFFTDNDSLKQQKKKKPKKMK
EGKMPKVKKRKKEGGGGGGVGGGGSDLKEQAPEREDDRPLQGPEIGSESESSTYAPTTKK
KKKPKDKKEKKPKRKKREEEEEDDDDDDDEDDENNKEPKSSSQLMQEWGLEDVQYGFTEE
DYTTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGTSATAVAAAV
AAAVETVTVASPTSVKEITTLSSSQPGQIRKAKTKEGKGPGVRRKTKTVKEVKKKSKGRK
TKSKKKASSSEEDFGLEESDFDDVSIHSASVRSDTSGNAKKKARKGRKKRKREDGDGYET
DHQDYCEVCQQGGEIILCDTCPKAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDD
DEEEEVAVEEEDDHLEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCM
CPPPKGKVQRILHWIWGDPPLPTEVPPGPDGETVDPLVKPPLKGHPERELFVKWAGLSYW
HCSWVSELQLELYHAVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRKSKDPEYAAMEER
FYRYGIKPEWMVIHRILNHSYDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYHNAKHSY
WDHREQMIGDDQRPLVVRKGKKGKEEEKRREREIPPNAPIIDPTIKFEHQPWYINATGGT
LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLS
TIINWEREFEMWAPDFYVVTYTGDKESRAVIRENEFTFEDSAVKTGRKVFRMKKDTAIKF
HVLLTSYELITIDQTILGSINWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPL
QNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKN
MPSKTELIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLF
PVAAVEAPVLPNGSYDGNQLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDF
LEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD
SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGS
KTGSMSKQELDDILKFGTEELFKDEMEAAARAMGSHQKLCKNNGDIKDGDEGSVIHYDDN
AISKLLDRSQNATEDTEIQNMNEYLSSFKVAQYVVKDEDAEEEPQREIIKQEENVDPDYW
EKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDDLSDNHSEYSVGSEDED
EDFEERPEGGRRHSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMP
PQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLT
RIGVMSLVRKKVQEFEHVNGKYSTPDLIPIGLELKKLTESLSSDPNTPVPASPAATPQPP
GSPVPPEKMDSISGPAEDKEPTEQECKKLPELETHVSTESSSQVEKTDIAPDSDETEKGS
TEDKPVSSEESSEMTDIPSALIEPSINPKEPPSIQTELLSNQSSPKAEPCRETEKSLEKG
DSDPAPAKPEEKELNPVVSDEAKSEDLLMPEGRLNGEKEAQEEMEEVRRELLEKNGFKMR
FMFNIADGGFTELHTLWQNEERAAVSSGKMYDIWHRRHDYWLLAGIVTHGYARWQDIQND
PRYAIHNEPFKTEMHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPSHPA
MALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKGLSSPSVYTAAGLKHCLQTQDLV
LNQLEELLSDMKADVTRLPNMLSRIPPVSSRLQMSERSILSRLTSRGNEPPPQQPFGQGS
FACSQMYSTGFGGSFRGPAGEAMVNYSQMPLGPYVSMSNGPPPPSSHLDKKSCDHLRDVT
TPDLKSGKPSDVICIED
NT seq
6174 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtcgttaagcaatgaagacgagggacaagaggacatggattttgaagacgaa
ataccagatgaggatgaggatggtcaacgtaacactgtcccgctcacacctctggacagc
tttttcactgacaacgactccctcaaacaacagaagaagaagaaacccaaaaagatgaag
gagggcaagatgcctaaagtcaagaagaggaaaaaggagggaggaggaggtggaggagta
ggaggtggtggcagtgacttgaaggagcaggcccctgagcgggaggatgaccgtccactg
cagggtccagagattggttcagagagcgagagcagcacctacgcccctaccacaaagaag
aagaagaaacctaaggataagaaagagaagaaacccaaacggaagaagagagaagaggag
gaggaggatgacgatgatgatgatgacgaagatgatgaaaataataaggagcccaagtcg
tccagtcagctgatgcaggagtggggtctggaggatgtgcagtatggcttcacagaggag
gactatacaaccctcaccaactacaaggccttcagccagttcctcaggccacttattgcc
aagaagaaccctaagatccccatgtcaaagatgatgacagtgttaggggccaagtggcga
gagttcagcgctaacaaccccttcaaaggcacctctgcaactgctgtggctgccgcggtg
gctgctgccgtggaaacggtcaccgttgcctcgcccacctctgtcaaagagatcactaca
ctgtcaagctctcagcctgggcaaatcagaaaagccaaaaccaaagagggaaaggggcct
ggggttcgacggaaaacaaagactgtaaaggaggtaaagaagaaaagtaaagggaggaag
accaaatcaaagaagaaagcatcctcgagtgaggaggactttgggctggaggagtcggac
tttgatgatgtcagcatccacagtgcctcggtgcgctctgatacctcggggaatgccaag
aagaaagcccggaagggtcggaaaaaaaggaaaagagaggatggggacggctatgagaca
gaccaccaggactactgtgaggtgtgccagcagggaggggagatcatcctgtgtgacacc
tgtcccaaagcctatcacctggtgtgtctggaccctgagctggagaaagctcccgagggc
aagtggagctgcccccactgtgagaaggagggcatccagtgggaggccaaagatgatgac
gatgaggaagaggaggttgcggttgaggaagaggacgaccacctggagttctgcagagtg
tgtaaagacggaggggagctgctgtgctgtgacacctgcccctcctcctaccatatccac
tgcctcaaccctccactgcctgagatacccaatggggagtggctgtgcccacgctgcatg
tgtccacctccgaaggggaaggtacagagaattctccactggatttggggggaccccccc
ttaccaactgaggtgccccctggccccgatggagagactgtggacccgctggtaaagccc
cccctgaagggccacccggagagggagctgtttgtcaagtgggctggtctctcctactgg
cactgctcctgggtcagtgaactgcagttggagctgtaccacgcggtgatgtatcgtaac
taccagaggaagaacgacatggacgagccccctccgtacgactacggctctggggaggag
gagctgaacaacgagaagaggaagagtaaagacccagagtacgctgccatggaggagaga
ttctaccgctacggcatcaagccagagtggatggtcatccacaggatcctcaaccacagt
tatgataaggatggagatgtgcactacctgatcaagtggagagacctgccctatgaccag
tgcacctgggaggtggatgactttgacgtccctgagtatcacaacgccaaacattcctac
tgggaccacagggagcagatgattggtgacgaccagcgccctttagtggtgagaaaggga
aagaagggcaaagaggaggagaagaggagggagagagaaatccctcctaacgctccaatc
atagatcctaccatcaagtttgaacatcaaccgtggtacatcaatgccactgggggaacc
ctacacccgtaccagctggaggggttgaactggctgcggttctcctgggcacagggcaca
gacacaatcctggcagacgagatgggcctgggcaagactgtccagaccatcgtgttcctc
tactcactctacaaggagggtcactccaaagggccatacctggtcagtgcccccctgtcc
accatcatcaactgggagagggagtttgagatgtgggccccagacttctacgtggtgacc
tacactggggacaaagaaagccgggcggtcatccgggagaacgagttcaccttcgaggac
agtgcggtcaaaacaggccgcaaggtcttccgtatgaagaaagacacggccatcaagttc
catgtgttgctgacgtcatatgagctaatcaccatcgatcagaccattctgggctccatt
aactgggcctgtctagtggtggacgaggcccacagactgaagaacaaccagtcaaagttt
ttcagaattctcaatgggtataagatctactataagctgctactgactggcactcctctg
cagaacaacctggaggagctgtttcacctgctcaacttcctcaccccagagagattcaat
aacctggaggggttcctggaggagtttgcagacatctccaaggaggaccagatcaagaag
ctgcatgatctgctgggcccacacatgctcaggagattgaaggctgacgtcttcaagaac
atgccttccaagacagagctcattgtacgagtggagctcagccccatgcagaagaagtac
tacaagtttatcctgacgcggaactttgaggcgctcaactccaagggcgggggcaaccag
gtgtccctgctcaacatcatgatggacctgaagaagtgctgcaaccacccctatctgttt
cccgtggcagccgtggaggcaccagtgttacccaatggctcttatgatgggaaccagctg
gtcaagtcctcaggcaaactcaccctgctccagaagatgctgaagaaactcaaagatgaa
ggacacagagttctcatcttctcccagatgactaagatgctggatctgcttgaggacttt
ctggaatacgagggctacaaatatgaacgcattgatggaggcatcacagggggactacga
caggaggctatcgaccgcttcaacgcaccgggtgctcagcagttctgcttcctgctctcc
acccgagctggaggcttgggcatcaacctggccacggcagacaccgtcatcatctacgac
tcagactggaaccctcacaacgatatccaggcattcagcagggcccaccgtataggtcag
aataagaaggtgatgatctatcgctttgtgacgcgagctagcgtggaggagcgcatcacc
caggtggccaagaggaagatgatgctgacccacctggtggtgaggcctggcctgggctcc
aagaccggctccatgtccaaacaggagctggacgacatcctcaagttcggcaccgaggag
ctcttcaaggacgagatggaggcagctgcacgggccatgggttcgcatcaaaaactctgt
aagaataatggggacataaaagatggagatgagggcagtgtcattcactatgatgacaat
gccatctccaagctgctggaccgtagccagaatgccacggaggacactgagatccagaac
atgaacgaatacctcagctccttcaaggtggcccagtatgttgtcaaagacgaggacgca
gaggaggagccccagcgggagatcattaagcaggaggagaatgttgatccagactactgg
gagaagctgctgaggcaccactatgagcagcagcaggaggacctggcccgcaacctgggc
aaaggcaaacgcatccgcaagcaggtcaactacaacgacacgtctcaggaggaccaagag
tggcaggatgatctttcagacaatcattccgagtactccgtggggtccgaggacgaggac
gaagatttcgaggagaggccggaaggtgggcgcagacattctcgcaggcagctgaagagt
gacagggacaaacctctgccacccctgctggcacgcgtagggggcaacatcgaggtgctg
gggttcaacgcccgtcagcggaaggccttcctcaacgctatcatgcgctggggcatgcct
cctcaggacgccttcaactctcactggctggtcagagacctaagagggaaaagtgagaaa
gagttcagggcctacgtgtccctgttcatgagacatctttgtgagcccggggcagacggg
gcggagacctttgcagatggggttccacgagaagggctgtcccgtcagcatgtcctcacc
aggattggggttatgtctctggtcaggaaaaaggtccaggagtttgagcatgtcaatggg
aaatacagcactccagacctgatccctattggactggagctgaagaaactgactgagagt
ctgtcctctgaccccaacacccccgtccctgctagccctgctgccacaccccagcctcct
ggaagtcctgtcccaccagagaagatggactcgatctcagggcctgctgaagacaaggag
cccacagaacaggaatgcaagaagctaccagaactggagactcatgttagtacagagtca
tcatcccaggtagagaagacagacatcgctcctgacagtgatgagacagagaaaggcagc
acagaggacaaaccagtctcctcagaggagagtagtgaaatgacagacataccctccgca
ctgatagagccatccatcaatcctaaagagcctccatccatacagacagagctgttgtcc
aatcaaagctcaccaaaagcggagccctgtcgagagacagagaagtccttagaaaaagga
gacagtgatcctgctccagccaaacccgaggagaaggaactgaatccagttgtttcagac
gaggccaagagcgaggacttgctcatgcccgagggacggctgaatggagaaaaagaagca
caggaggagatggaggaggtcaggagggaattactggagaagaatggtttcaagatgagg
ttcatgttcaacattgccgacggaggcttcacagagctgcacaccctgtggcagaacgag
gagcgggctgccgtgtcatctgggaagatgtatgacatctggcaccgtcgccacgactac
tggctactggctggcatcgtaacacatggctatgcccgctggcaggacattcagaacgac
ccacgctatgccatccacaatgagcccttcaagactgagatgcacaagggaaattacctg
gagatgaagaacaagttcctggctcgtcgctttaagctgttggagcaggctctggtgata
gaggagcagttgaggagggcagcgtacctgaacatgacccaggaccccagccatccggcc
atggccctaaacactcgctttgctgaggtggagtgtcttgctgagtctcaccagcacctg
tccaaggagtctctggctggaaacaagccagccaacgctgtgctgcacaaaggtctgtca
tctcccagtgtgtacacagcagcaggactaaaacactgtctacaaactcaagatctggta
ctgaaccagctggaggagctgttaagtgacatgaaggcggatgtgacgcggcttcccaac
atgttgtcccggatccccccagtgtcttcgcgtctgcagatgtctgagaggagtatcctc
agccgcctcaccagccgcggcaacgaacctccgccccaacagccgttcggccagggctca
tttgcctgttcccagatgtacagcactggctttgggggcagtttccgggggcctgcaggt
gaagccatggtcaactatagccagatgcccctgggaccctatgtcagtatgtccaacggc
ccccctcctccatccagccacttggacaagaagtcctgcgaccacctgagggatgtcacc
acccctgaccttaagtcaggcaagcccagtgatgttatctgtattgaagattag
DBGET
integrated database retrieval system
