KEGG   Oncorhynchus mykiss (rainbow trout): 110528030
Entry
110528030         CDS       T07259                                 
Symbol
sort1a
Name
(RefSeq) sortilin isoform X2
  KO
K12388  sortilin
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy04142  Lysosome
Brite
KEGG Orthology (KO) [BR:omy00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome
    110528030 (sort1a)
SSDB
Motif
Pfam: Sortilin-Vps10 Sortilin_C BNR_6
Other DBs
NCBI-GeneID: 110528030
NCBI-ProteinID: XP_021465485
Ensembl: ENSOMYG00000029372
LinkDB
Position
7:complement(56772815..56796604)
AA seq 702 aa
MIRLGQSKLYRSEDYGKTFQDVTHLINNTFVQTEFGIAIGPDNSGRVIMTGDVSEGGGSR
IFRSLDYGHSFSPADLPFFPLIQTLYNPNDNNVLLTLSITLDLWLSEDFGSTWRKIHDSV
CLVRWGPEDSIYFTTNSNGSCNDKGMLELKRSLDYGKNIKTIASKIYSFVLGGRFVFASI
MTGSGTQRMIHVSIDGGDVWNMAQLPTVGHEQFYSILAASDDMVFMHVDEPGDTGIGTIY
ISDDRGTLYSKSLERHLYTATGGDTDFTNVTSLRGVYMTSVLTEDGSVETVVSFDQGGEW
RPVQRPRNSRCDTETATNRPDRCSLHIHALYSISMKMNVPLLPLTQFNAIGLILAHGSVG
DPVSVLSPDVYVSDDGGYSWLRALTGPHHYAILDSGGLLVAVEHTSAPVNQIKFSTDEGQ
CWHVYNFTSEPLYFTGLALEPGAHSMNLSLWGYRVGLQGPLSHYWVSVTIDFKQLLSRDC
GEGDYVQWLAHSDDLNNPNDGCILGYKERFLRLRKDSVCWNGRDYVITTQPTPCQCTLDD
YQCDYGYHRAENSSECVEQADLKGHVLEFCLHGTTEQLQTSGYRKIPGDRCVGGIQPKRK
EIDLRRNCISNALHPKPLTEANLLSSASIVLVVMVILLISAATGVMLVKKYVCGGRFLVH
RYSVLQQHAEANGIEGVDELDTHTTEMGKTHYHEDSDEDLLE
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgattcgccttggccagtctaaactctaccgcagcgaggactatggaaagacattccag
gacgtgacccacctgatcaacaacacctttgttcagactgagtttggcatcgccattggt
cctgacaactctggcagggtgatcatgacaggtgatgtgtcagagggagggggatcccgg
attttccgctcgttggattatggacatagtttttccccagcggacctccccttctttcct
ctgattcagacactgtataaccccaacgacaataacgtgctactgaccctcagcatcacg
ttggacctgtggctgtctgaagactttggctccacctggaggaagatccatgacagcgtg
tgtctggtcagatggggtcccgaggacagcatctacttcaccacaaactctaacggatcc
tgcaatgataagggcatgttggagctgaagaggtctctagactatggcaagaacatcaag
accatcgccagcaagatctactcctttgtacttggaggacgctttgtcttcgcctccatc
atgactggctcgggtacccagcgtatgatccatgtgtcgatagatggtggtgatgtgtgg
aacatggctcagctccctactgttggccatgagcagttctactccatattggcagccagc
gacgacatggtgttcatgcacgtagacgaacctggagacactggcatagggaccatctac
atatcagatgacagagggacactctactccaagtctctggagcgccacctctacacggcc
acagggggcgacactgatttcaccaacgtcacctcgctcaggggtgtctacatgaccagc
gtactcacagaggacggctcagtggagactgtggtgtcgtttgaccaggggggggagtgg
cggccggtacaacggcctcgaaacagccgctgtgacactgagaccgccaccaaccggccg
gaccgatgcagcctgcacatccacgccttatacagcatctctatgaagatgaacgtccct
ctactgcccctcacacagttcaacgctataggcctcattctggctcatggtagtgtgggt
gacccagtgtctgtgctgtctcctgatgtgtatgtgtctgatgatggaggctactcctgg
ctgagagcgctaaccggaccccaccactacgccatcctagactctggaggccttttggtg
gctgtcgaacacacatctgcacccgtcaaccagatcaagttttccacagacgagggccag
tgttggcatgtgtataacttcaccagtgagccgctgtatttcacagggctggcgttggag
cctggagcccactccatgaacctcagcctgtgggggtacagagtgggcctgcagggtccc
ctcagtcactactgggtctctgttaccatcgacttcaaacagctactctccagagactgt
ggggagggggactatgttcagtggttggcgcactctgatgacctcaacaaccccaatgac
ggatgcattctgggatataaggagcgtttcctgcggctgaggaaagattctgtctgctgg
aacggacgtgattatgtcatcaccacccagcccaccccctgccaatgcacactggatgac
taccagtgtgactatgggtaccaccgtgcagagaacagttctgagtgtgtggagcaggca
gacctgaagggccatgttctggagttctgtcttcacggcaccacagaacagctgcagacc
agtggctaccggaagattccaggcgaccggtgtgtgggcgggatccagcctaagaggaag
gagattgatctgaggagaaactgcatcagcaatgcacttcacccaaaacctctgacggag
gccaacttgttaagctctgcctctatagtactggttgtaatggtgattttgctcatcagc
gctgccacaggggttatgctcgtcaagaaatatgtctgcggagggaggttcctggtacac
aggtactcagtgctacaacagcatgcggaggccaatgggatagagggagtggatgaactg
gacacacacaccaccgagatgggcaaaacacactaccacgaagactcagatgaggacctc
ttggagtga

DBGET integrated database retrieval system