KEGG   Oncorhynchus mykiss (rainbow trout): 110528064
Entry
110528064         CDS       T07259                                 
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1
  KO
K15544  RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110528064
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:omy03021]
    110528064
   03019 Messenger RNA biogenesis [BR:omy03019]
    110528064
Enzymes [BR:omy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     110528064
Transcription machinery [BR:omy03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     110528064
Messenger RNA biogenesis [BR:omy03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     110528064
SSDB
Motif
Pfam: Ssu72
Other DBs
NCBI-GeneID: 110528064
NCBI-ProteinID: XP_021465530
Ensembl: ENSOMYG00000036931
UniProt: A0A060WA28
LinkDB
Position
7:complement(58277852..58282613)
AA seq 194 aa
MPSHPLRVAVVCSSNQNRSMEAHNILSKRGFEVRSFGTGSHVKLPGPAPDKPNVYDFKTT
YEQMYNDLVRKDKELYTQNGILHMLDRNKRIKSRPERFQSCKDQFDLVITCEERVYDQVL
EDLSSREQETFTPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFE
DKSNRPFLHTVCFY
NT seq 585 nt   +upstreamnt  +downstreamnt
atgccgagccacccgctgcgcgtggcggttgtgtgctcgagcaaccagaaccgcagcatg
gaagcgcacaacatcctcagcaagcgaggctttgaagttcgctcttttgggacagggtcc
catgtgaagctacctggtcctgcaccggacaagcccaatgtgtacgacttcaaaaccact
tatgaacagatgtacaacgacctggtccgcaaggacaaggagctatacacacagaatgga
atcctgcacatgctggaccgcaacaagcggatcaagtcccgaccggaacgcttccagagc
tgtaaggaccagtttgacctggtcatcacctgtgaagagagggtctacgaccaagtgcta
gaggacctgagctctcgggagcaggagactttcacgccggttcacgtcatcaacgtggac
atccaggacaaccacgaggaggccacactgggggctttcctcatctgtgagctgtgtcag
tgtatccagcacacggatgatatggaaaacgaaatggacgagctgctgcaggagtttgag
gacaagagcaacaggcctttcctccacactgtctgcttctactga

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