KEGG   Oncorhynchus mykiss (rainbow trout): 110528606
Entry
110528606         CDS       T07259                                 
Symbol
sec13
Name
(RefSeq) protein SEC13 homolog isoform X2
  KO
K14004  protein transport protein SEC13
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013  Nucleocytoplasmic transport
omy04141  Protein processing in endoplasmic reticulum
omy04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110528606 (sec13)
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    110528606 (sec13)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    110528606 (sec13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:omy03019]
    110528606 (sec13)
   04131 Membrane trafficking [BR:omy04131]
    110528606 (sec13)
Messenger RNA biogenesis [BR:omy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     110528606 (sec13)
Membrane trafficking [BR:omy04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    110528606 (sec13)
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    110528606 (sec13)
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    110528606 (sec13)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta EIF3I ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_WDR36-Utp21_1st Beta-prop_EML NBCH_WD40
Other DBs
NCBI-GeneID: 110528606
NCBI-ProteinID: XP_021466415
Ensembl: ENSOMYG00000035210
UniProt: A0A8C7SZ12
LinkDB
Position
7:complement(82121338..82132214)
AA seq 320 aa
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVKNGGQILVADLRGHEGPV
WQVAWAHPMYGNILASCSYDRKVIIWKEENGTWDKMYEYTGHDSSVNSVCWGPYDFGLIL
ACGSSDGAISLVTCSGDQQWDIKKISNAHTIGCNAVSWAPSVVPGSLIDQPSGQKPNFIK
RFVSGGCDNLVKLWKEEDGQWKEDQKLEAHSDWVRDVGWAPSIGLPTSTIASCSQDGRVF
IWTCDDLSGNTWTAKLLHKFNDVVWHVSWSVTGNILAVSGGDNKVTLWKESADGQWACIS
DVNKGQGAVSSIADGATNEQ
NT seq 963 nt   +upstreamnt  +downstreamnt
atggtttccgtcatcaacacggtggacacctcccacgaggacatgatccatgatgcccag
atggattattatggcaccagactggccacctgctcttctgacaggtctgtcaagatcttc
gatgttaaaaacggaggacaaatcctagtggcagatctgagaggccatgagggtcctgtg
tggcaggtggcctgggctcaccccatgtacggcaacatcctggcctcctgttcctatgac
aggaaggtgatcatatggaaggaagagaacggaacctgggataagatgtacgagtacact
ggacatgactcttcagtgaattcagtgtgctggggtccctatgactttggtctgatcctg
gcctgtggcagctcggatggagccatctcattggtcacctgttctggggatcaacagtgg
gacattaagaagatcagcaatgcacacacaattggctgtaacgcagtgagctgggctcca
tctgtggtgccaggtagtctgatagaccagccctcgggtcagaaacccaacttcatcaag
aggtttgtctcaggaggctgcgacaacctggtcaaactctggaaagaggaggatggccaa
tggaaggaggaccagaagctggaggctcacagtgattgggtcagagatgtaggctgggct
ccctccataggactacccaccagcaccatcgccagctgctctcaggacggcagggtcttc
atctggacgtgtgacgacctttcaggcaacacgtggacggctaaactcctccacaagttc
aacgacgtggtgtggcatgtcagctggtccgtcactggaaacatcctggccgtgtccggg
ggggataacaaggtgacgttgtggaaggagtcggcagacggccagtgggcctgtatcagc
gacgtcaacaaaggccagggagccgtatcgtccatcgcagacggagcgacgaacgagcag
tga

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