Oncorhynchus mykiss (rainbow trout): 110529043
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Entry
110529043 CDS
T07259
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04510
Focal adhesion
omy04512
ECM-receptor interaction
omy04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110529043
04518 Integrin signaling
110529043
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110529043
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omy00536
]
110529043
Glycosaminoglycan binding proteins [BR:
omy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110529043
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
110529043
NCBI-ProteinID:
XP_036840075
LinkDB
All DBs
Position
7:complement(80261240..80353006)
Genome browser
AA seq
1491 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLLAVVKCQEEDQDLGSCMQDGQRYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGRAPGAKGQKGEPGDITDVV
GPRGPGGPMGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPSGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSA
GPLGPRGPPGPSGKPGDDGEAGKPGKGGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLD
GLKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIG
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GPQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVG
GVSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPMGAR
GQPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQ
GPRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPE
GASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFA
GPPGSDGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPSGAT
GFPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGPAGSPGEK
GDAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGSPGANGSP
GPVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFT
GLQGLPGPPGQAGDQGASGPAGPSGSRGPPGPIGPSGKDGSNGMPGPIGPPGPRGRSGET
GPSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCN
METGESCVYPKPASIPKKNWWSSKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASIQMT
FLRLLSTEASQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMQD
GCTKHTGAWGKTVIDYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcgttcta
ttagcagttgtcaaatgtcaggaagaagaccaggacctaggcagctgtatgcaggacgga
cagcgctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgacgaaataatctgcgaggagattaaagactgccccaaacct
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagcccccccaagt
ggtcgggccccgggagctaagggtcagaagggggaaccaggagatatcacagatgtcgta
ggaccaagaggacctggaggccctatgggccccccaggagagcagggaccacgcggagac
agaggagacaaaggcgataagggcagtcccgggccccgtggcagagatggcgagcctggt
acccctggtaaccccggcccccccggaccctcaggacctaacggacctcccggccttgga
ggaaactttgctgctcagatggctggaggatttgacgagaaggctggcggagcacagatg
ggcgtgatgcaaggaccaatgggccctatgggtcctcgagggccacctggcccctctgga
gctcctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagct
ggcccgttgggtccccgtggtccacctggaccctctggtaaacctggagatgacggtgag
gctggcaaacccggaaaaggtggtgatcgtggaccttctggtcctcagggagctcgtggc
ttcccaggaactcccggtctgcctggaatcaaagggcatagaggttatccaggtcttgat
ggactcaagggagagggtggagctgctggttctaagggggagtctggtgcacccggtgag
aatggcgctcccggacccatgggaccacgtggtctgcctggtgagagaggtcgccccggt
ccctctggagctgctggtgctcgtggtaatgacggtctgcccggccctgctggtcctcct
ggcccagtcggtccatctggtgctccaggcttccccggctctccaggttctaagggagaa
gctggccccaccggtgctcgtggacctgagggcgcccagggaccacgtggagagtcagga
acccccggatctcccggacccgccggcgcttctggtaaccctggtactgatggtattggt
ggagctaaaggatcagctggtgctcctggtatcgctggcgcgcctggcttcccgggaccc
cgtggccctccaggaccccagggagccactgggcctctcggaccaaagggaacatctggt
gaccctggtatcccaggtttcaagggtgaggctggacccaaaggagagattggacccgcg
ggtccccaaggagcccttggccctgcaggagaggaggggaagaggggacccagaggagag
cccggcgctgctggacctctcggacctcccggagagagaggcgcccccggtaaccgtggt
ttcccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggagtcggc
ggcgtgtctggccctaagggagccggcggtgaccctggtcgccctggcgagcccggtctt
cctggtgcaagaggtcttactggtcgtcccggtgatgcaggtcctcaaggaaaagttgga
cccggtggtgctgctggtgaggatggtcgccctggtccccctggccctatgggagcccgc
ggtcagcctggcgtgatgggattccccggacccaagggagccaacggcgaacctggcaaa
ggcggagagaaaggattgctcggtgcgccaggtctgagaggtcttcctggtaaggatggt
gagaccggagctgctggaccccctggccctgctggccctgctggagagagaggagagcaa
ggacaacctggaccttctggcttccagggtctgcccggacctcctggaccccctggtgag
ggtggcaagcctggtgacatgggagttccaggagagggtggagctgctggtgccactgga
ccaagaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcag
ggaccccgtggtcttcctggaactcctggaactgacggacctaagggcgcgatcggacca
ggtggtgcatcgggtgcccagggaccccccggtctgcaaggtatgcccggagagagagga
gcctcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacctgag
ggtgcttctggcaaagacggttcaagaggtttgactggtccaattggtcctcctggccca
gctggtcccaatggagagaagggtgaatctggtccctctggaccttccggtgctgctggt
gcccgaggtgcccctggtgacaggggtgagactggacctcctgggcctgctggcttcgct
gggcctcctggatctgatggtcagcccggagtcaagggagagcagggagagggtggacag
aagggagacgctggtgcccctggaccacagggaccctccggagctcctggaccttccgga
cctactggcgtttctggacctaaaggtgctcgcggtgctcagggaccctctggtgccact
ggtttccctggagctgccggcagagtcgggccccctggtcccaatggtaaccctggtgct
gctggtccctctggccctgctggtaaagatggccctaaaggtgtgcgtggagacggtgga
cccccaggcagacagggagatgctgggctgcgtggacccgctggatcccctggagagaag
ggagatgctggagaggatggtccctctggtcccgatggtccttcaggcccttcaggtctg
gctggacagcgtggtattgttggtcttccaggacaacgtggagagagaggtttccctggc
ctgccaggaccctctggtgagcctggtaaacaaggatctcctggtggaagtggagaccgt
gggccccctggccctgtggggccccctggactgactggacccgcaggagagcccggtaga
gagggcaacgctggttctgatggaccccctggtagagatggagccactggaatcaagggt
gaccgtggtaacaccggtcctgctggtgctcctggctccccaggagctaatggttccccc
ggccctgtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggacca
gctggacctgccgggcctgctggagccagaggaatggctggaccccaaggaccccgtgga
gacaagggtgaggctggagagggtggtgagagaggacagaaaggacacagaggattcact
ggtctgcagggtctgcctggacctcccggtcaagctggagaccagggtgcatctggacct
gccggaccaagtggatcaagaggacctcccggacctattggtccctctggaaaggatggt
tccaacggtatgcccggccccatcggaccccccggaccccgtggtcgctctggagagact
ggtccctctggtccccctggaaactccggtccccctggtcctcctggtcctcccggccct
ggtatcgacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctg
aggtacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggac
gccacgctcaagtctctcaacaaccagattgagaacatccgctcccccgagggctccaag
aagaaccctgcacgtacttgcagagacctgaagctgtgccacccagactggaagagcgga
gagtactggatcgaccctaaccagggctgcaccatagacgccatcaaggtctactgtaac
atggagaccggagagtcctgcgtctaccccaagcccgccagcatccccaagaagaactgg
tggtccagcaagagcaaggctgccaaacacgtctggttcggagagaccatgaacggagga
ttccacttcagctatggcgatgacagcctggctgccaacacggccagcatccagatgacc
ttcctgcggctgctatccaccgaggctagccagaacctcacctaccactgcaagaacagt
gtggcttacatggacggagccacgggcaacctgaagaaggccgtgctgctccagggctcc
aacgatgtggagatcagggccgagggaaacagccgcttcacctacaccgttatgcaggac
ggctgcacgaaacacacaggagcatggggcaagacagtgattgactacagatctcagaag
accagccggctgcccatcgtggacattgctcccatggatattggaggagcggaccaagag
tttggagtcgacgtcggcgcagtctgcttcttgtaa
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