Oncorhynchus mykiss (rainbow trout): 110529109
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Entry
110529109 CDS
T07259
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
110529109 (col17a1b)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
110529109
NCBI-ProteinID:
XP_021466890
Ensembl:
ENSOMYG00000006268
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Position
1:73647943..73672307
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AA seq
1654 aa
AA seq
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MDDLTTRKRNHSGGSSGGKVVTETTTSTSRLVSLPPKGGSGSKSSTHRTMSSNAGGLWLE
KNILTQNSSGTNFSSSSVGVNAGGSSSSSGFYMGDYSEGGGDGGGGGGGGGGGGGGGGGG
GGGGVGSGGGGGSGYGGVYGGSPGSKVKSSSSGCSRRAQSSASPGGLSPGFLERKSMASR
SGGYDGSSSGNSSPEFTRKDYAGSGATRIGRSQSRESEIRARLQSASPSAGRWTELDDVK
RLVKGGRSNSVSPTRSSASSTLPVPRKATVEAKIVTQASQSVSGQYETTTLDSGLPSSYC
WTSSTLPISSATGNSSSAYGYHSNTNNMSPGLGSSLLNTTSPSSLSVYGFQNNLAPMSSS
VLTTSGVNAHSGTLTAGYGVQKNISNGGGLVSTGVSTSAMSALRSHTDDAYRKDLKYLVL
QKENVPVKRDTEVLTLTKDSGKHFTSSVRSVGGSLSGDSLKKEKMVSSYSETAPVLLKSE
SNSYYGSPLVSTKDKATYAEIQKEGDYYSSGGRGGGCCGCEDSCCSWWKWLLGLLLLSLL
LLGLLFGLIALAEDVRNLKSRVAALETTSTAAHASRLSASNNDIHNPQSGTYMDTGGAAR
SDNTLNLDTSLGMGMGTGTGTGIAGHTDNAALQRTIQQLLRAEMQSQSFRALLTSSMKGD
RGEPGTKGDAGNHGTKGDNGFPGLPGPPGAIGHPGHEGPKGQKGSQGDHGAEGPQGLRGR
EGPGGPRGEPGPSGFGEKGEKGSPGESGSLGPAGPVGPAGPKGSGGAPGTPGTPGQPGSQ
GFRGESGLPGPKGERGPAGFQGIKGDHGEKGPRGAAGDPGLSGLPGPAGEKGPKGSAGTP
GIDGDKGQRGDHGPTGLPGIRGPSGPAGDSGLPGTPGLQGPPGIPGNPGQPGAKGEAGEP
GRIINAGGSSSVAIPGPPGSPGAPGQAGPPGLSGPIGPAGLPGQSGPKGERGLKGEMGIQ
GLQGEAGISVKTSETVSSSRAERQFNLPAQPGPPGPPGPPGAPGRAGDSRSGLPGPAGPP
GEPGYGRPGPRGEKGESGSFVPNSGTFFSGPPGPPGPSGPKGSPGTPGPRGNQGDAGQPG
LPGSPGRPGGGSERASPYGGTHGPPGPPGTPGIPGPEGRKGEPGIPGSPGLPGSARGTVA
ASSGFPGPPGPPGPPGHPGIPGIASAPPDLRQYVNDYLRINARSMSSGLPGPRGLPGPPG
APGSSGSSSSVEDISSRVIAYLQRSGSGFGGGAQGPPGPPGLPGSSGSGSGSMSVNDLIV
MLQRDDVRRYVMGPPGPPGPAGPAARGGSTANYDPQEVATYVFRIMNERGIGGGQPGPPG
ATGPPGLPGSFSGVSDISALLQNSQFRAMVGRSAGAPGPPGTPGIPGPPGTPGTPGGSSY
RSSASGGLRIEDVQHYLQSSGYSGPPGPPGPPGPQGPPGNSHGVVSYGDSRNIGNYQRES
IRTELQAYLSSDSIRHSFIGQPGPPGSQGPRGHKGDPGEPGGVQTNRQSYAQSDPRYSSD
LERRQSDIGRLTEPLDYSNVALRVTDYIKNQGLLQDILSESHQRGGSWESQGLPGPPGPP
GPPGYSRVIGAYGNVTADLMDFFRTHGTIVGPPGNTGPKGDRGYLGPKGDRGEMGRPGPP
GLQGLHGQDGYRGEKGEKGAGEVRVGRRRRSIGV
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttaacaacaagaaagagaaaccactcaggaggaagctccgggggaaaggtt
gtgacagaaactacaacctcgacaagtagattggtatctttacctccaaagggtggcagt
ggatcaaaaagtagtacccacaggactatgtctagcaatgctggaggcctgtggttggaa
aagaacattttaacccagaacagcagtggaactaacttttcctcatcttctgtgggtgtc
aatgccggaggatccagctcctcatcagggttctacatgggggactactctgagggtggt
ggagatggtggagggggaggtggtggagggggaggtggtggaggtgggggaggtggagga
ggcggcggaggtgttggcagtggaggtgggggtggctcaggctatggaggagtgtatgga
ggaagccccgggtcaaaagtaaagagcagctcgtcagggtgctccaggagggcccagagc
tctgcctcgcctgggggtctctcccctggcttcctggaaaggaagagtatggccagtcgc
tcaggaggctacgacggaagctcaagtggcaactcctcccccgagtttacacggaaagac
tatgcagggtcaggtgccactagaatagggaggagccagagcagagagagtgaaatcaga
gccagactgcagagtgcctctcccagtgctggcagatggactgagctggatgatgtgaag
aggctggtgaagggaggacgctccaacagtgtcagccccacccgctcctccgcttcctcc
accctgcctgtccccaggaaggccaccgtcgaggccaagatcgtcacccaggcctcccag
tcagtctctgggcagtatgagaccactaccctggactctggcctaccttcttcctactgc
tggactagctctacgctgcccatctcctctgccactggcaacagcagcagcgcatacggt
taccatagtaacacaaacaacatgtctccaggcttggggtcctccctgctcaacaccacc
tcaccctcctccttgtcagtgtatggattccagaataacttggcgcccatgtccagtagt
gtcctcaccaccagtggagttaacgcacattcaggcactttgacagcaggatatggagtg
cagaagaacatatcgaatggtggtggtctcgtcagcaccggagtgtcaacctctgcaatg
tccgctttgaggtctcacactgatgacgcatacaggaaagacttaaagtaccttgtgctg
cagaaggagaatgttccagtcaagagagatactgaggtgctcaccctcacaaaagacagt
ggaaaacacttcactagcagtgttcgcagtgttgggggttcactgtctggtgattctcta
aagaaggagaagatggtgtccagctacagtgagactgcaccagtccttctgaagtctgag
tccaattcatactatggatcacccctagtgtcaacaaaagacaaagcaacatatgcagag
atccaaaaagagggggactactacagcagcggaggacgaggtgggggctgctgtgggtgt
gaggactcctgctgttcctggtggaagtggctgctaggactgctcctgctctccctgctg
ctcctgggcctgctctttgggctcattgccctggcggaggacgtgaggaatctgaagtct
cgagtggcagctctggagaccacctccaccgctgctcacgccagccgcctgtcagcctcc
aataacgacatccacaacccccagtctggcacctacatggacactgggggcgcggcccgc
tccgacaacaccctgaacctggataccagcctgggcatggggatgggcactggcacgggc
actggcatcgccgggcacacagacaatgctgccctccagaggaccatccagcaactactg
agagctgagatgcagtctcagtcattcagagcccttcttacctcttcaatgaaaggggac
agaggagagccgggaactaaaggcgatgcagggaatcatggaactaaaggtgacaatggt
ttcccaggactgccaggtcctccaggtgccattggtcacccaggacacgaaggacccaaa
ggacaaaaaggaagtcaaggtgaccatggagctgaggggccacaagggctcaggggccga
gaggggcctggagggcccagaggggagccaggaccctcagggtttggagagaagggggag
aaaggttctcctggtgaatcaggatctcttggtcctgctggtccagtcggcccggctggg
cccaaaggctcagggggtgctccgggtactcctggtacgccaggccaaccaggatctcaa
ggcttccgtggagaatcaggactacctggtccgaagggggagaggggtcctgctggattt
cagggaatcaaaggtgatcatggtgagaaaggacctcgtggtgccgcaggtgacccagga
ctatcaggcttgccaggaccagccggagagaaaggacccaaaggatctgcaggaactcct
ggaattgatggtgacaaaggccaaagaggtgatcacggtcctactgggttaccagggatc
agaggtccatctgggcctgcaggggactcaggcctaccaggaacacccgggcttcaaggg
ccaccaggaataccagggaatcctggacaaccaggagccaagggtgaggcaggagaacca
ggaagaatcatcaatgcagggggatccagttctgtggccatccccggccccccaggaagc
cccggagcacccggtcaagccggacccccagggttatcaggccccattggccctgctggt
cttcctggccagtctggtcctaaaggtgagagagggctgaagggtgagatgggtattcag
ggactccagggagaggcaggtatctcagtgaaaaccagtgaaaccgtcagctcatccaga
gctgagagacagttcaatcttcctgcacaaccaggtccccctggtccccctggaccccct
ggagcccctggacgtgcaggtgactcaagatcaggactcccaggaccagctggtccccca
ggagagccaggatatggcagacctggtcctagaggagagaaaggagagtcaggaagcttt
gtacccaattcaggaacattcttctctggaccccctggaccacccgggccatctgggcca
aaaggatcacccggtacaccaggaccaagaggaaaccaaggagatgcaggccagcctggt
ctaccagggagcccaggaagaccaggaggaggctctgaaagagcatcaccatacggtgga
acacatgggccacctgggcccccagggactccagggattcctggaccagagggacggaaa
ggcgaacctggaattcccggttctcctggtcttcctggctctgcaagaggcactgtggcg
gccagctcagggttcccaggtcctcctggtccaccgggtcctcccggacacccaggcatt
ccaggcatagcctctgctcctcctgatctgcgtcagtatgtcaacgactatctccgaatt
aatgctaggagtatgtcctctggtcttcctggcccccgtggcctccctggacccccagga
gcccctggatcctctggatcctctagttctgtggaggacatatcttctcgtgtcattgct
tatctgcagcgttcaggatcaggcttcggcggtggtgctcagggtcctccaggcccccca
ggacttcctgggtcctctggctctggttctggctcaatgtctgtcaacgacctcattgtt
atgctacagagggatgacgtacggcgatatgtaatgggcccacccggacctccaggccca
gcaggaccagcagccagaggaggcagtacggcaaactacgacccacaggaagtggctacc
tacgtcttcagaatcatgaacgaacgcgggatcggtggtgggcagcctggacctccgggt
gcaaccgggcctccagggctacctggctccttcagcggtgttagtgacatctccgcactc
ctgcaaaattcacaattccgtgcaatggttgggcgctctgctggagcccctggtcctcct
ggtactccaggtatcccgggacccccaggcacccctggtaccccaggagggtcatcttac
aggagctcagcctcagggggtttaaggatagaggacgtccagcattacctacaaagttct
gggtacagtggtcctccagggccacccggccccccaggacctcaggggcccccagggaac
tctcacggagtagtctcctatggagatagtagaaacataggaaactaccagcgagaaagc
atccgcacagaactccaggcgtacctcagcagtgacagtatacggcactccttcattggc
caaccaggtcctcctgggtctcagggtccccgtggtcacaaaggagaccctggagaacct
ggtggggttcagactaaccgtcagagttatgcccagagtgacccacgttactcttctgac
cttgagcggcgccagagtgacattgggagattgacagagccactagactactccaacgtt
gccttgagagtgacagactacatcaagaaccagggcttactgcaggacatcctgtctgag
agtcaccagcgaggaggctcctgggagtcccaaggcctcccaggaccccctgggcctcct
ggacctcccgggtatagccgtgtcattggagcttacggcaacgtgactgctgacctcatg
gacttctttagaacccacggcaccattgttggccccccagggaatactggcccgaaagga
gacagggggtacctcggacccaaaggagacagaggcgagatgggtcgcccaggccctcca
ggactgcagggactacatggtcaggatggatacagaggagagaagggagagaaaggtgca
ggtgaagttagggttggtcgtcggcgtcggagcatcggtgtttaa
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