Oncorhynchus mykiss (rainbow trout): 110529166
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Entry
110529166 CDS
T07259
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110529166
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
110529166
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
DUF494
HTH_31
Motif
Other DBs
NCBI-GeneID:
110529166
NCBI-ProteinID:
XP_036840504
UniProt:
A0A8K9XUR3
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Position
8:complement(5344512..5362682)
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AA seq
503 aa
AA seq
DB search
MVKCTEAHQDREPRMSHYTDEPRFTIEQIDLLQRLRRTGMTKQEILHALDTLDRLDREHG
AKFGHRTSYGGGASSSVSDPNCTTSNNTAATTSSSSITVDDDDNNNNNNSTSGSSEVNNT
TLASSCTNSTVAQTQYLSPRGGLSPSPSNSYDTSPLPSAVRHSPVSLVTMAQNGGRDSLA
ATPNGKLSPPRYPVNSAAAARAFGFEATEEELEIDDKVEELMRRDGSIVKEEIKSFLGNR
RISQAVVAQVTGISQSRISHWLLQHGSDLSEQKKRAFYHWYQLEKTSPGATLNMRPAPMA
MEEMEWRQTTPHISTAPGIFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAKREEISNAC
NAVIQKPGKKLSDLERVSSLKVYNWFANRRKEIKRRANIEATILESHWIDVQSPGGHSNS
DDIDGGDYTEQACDLPYFDKRPMARPFGFYRLEPTSPTQDDGTDHQDPISLAVEMAAVNH
TILALSRTGGVPSNIKTEVPDDD
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaatgtacagaggcacatcaagatagagagccaaggatgtctcattacacagac
gagcctcgcttcaccatcgagcagatcgacctgctccagaggctgcggcgtacgggcatg
accaagcaggagatcctccacgccctggacaccctagatcgactggaccgtgagcacggg
gccaagtttggacatcgcacctcctacgggggaggagcaagcagctctgtgtcagaccct
aattgcaccacctccaacaacactgcagccaccacctcctcgtccagtattactgttgat
gatgatgataataataataataataattccaccagtgggagcagtgaggttaacaacacc
accctggcctcttcctgcaccaactctaccgtcgcacagacacagtacctctcaccgcgc
ggggggctgtccccgtcgcctagcaacagctacgacacctccccactgccctctgctgtc
cgccactcccccgtgtcactggtcaccatggcgcagaacggtgggcgggacagcctggcg
gcgacgcccaatgggaagctctcgccgccgcggtacccggtgaacagtgcagcggccgcc
agggcgttcgggttcgaggcaactgaggaggagctggaaatcgatgacaaggtggaggag
ctcatgaggagagacggcagcattgtgaaggaggagatcaagtcgttcctggggaacagg
agaatctctcaggctgtggtggcccaggtcacaggaatcagtcagagcaggatctctcat
tggttgcttcaacacggctctgacctcagtgaacagaagaagagagctttctaccactgg
taccagctagaaaagacctccccaggtgccactctaaacatgcgccccgcccccatggct
atggaggaaatggagtggagacagaccacaccccatataagtaccgccccaggaatcttc
cggctacgcagaggaagtcgttttacctggaggaaagaatgtctggctgtgatggagagc
tacttcaatgacaaccagtaccctgacgaagctaagagagaggagatctctaacgcctgc
aacgctgtcatccagaaaccagggaagaagctatcggacctggagagagtcagctctctt
aaagtctacaactggtttgccaaccgacgcaaggagatcaagagacgagctaatattgaa
gccacgatcctggagagccattggatagacgtccagagtcctggaggacattccaacagc
gacgacatcgatggaggggactacacagaacaggcctgtgacctgccctacttcgacaag
agacccatggccaggccctttggcttctacaggctggagcccacttcacccacacaggac
gatggtactgaccaccaggaccccatctctctggctgtggagatggctgcagtcaaccat
accatcctggctctgtcccggaccggaggggtgcctagcaacatcaagacagaggtcccg
gacgatgactga
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