Oncorhynchus mykiss (rainbow trout): 110529452
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Entry
110529452 CDS
T07259
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X3
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110529452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omy03000
]
110529452
03021 Transcription machinery [BR:
omy03021
]
110529452
03036 Chromosome and associated proteins [BR:
omy03036
]
110529452
Transcription factors [BR:
omy03000
]
Eukaryotic type
Helix-turn-helix
ARID
110529452
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110529452
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110529452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
110529452
NCBI-ProteinID:
XP_021467300
Ensembl:
ENSOMYG00000043253
LinkDB
All DBs
Position
8:complement(14755991..14850443)
Genome browser
AA seq
2220 aa
AA seq
DB search
MAAQVATAPTSTGKKRSSLTSSVSQDFKSAKSGVVGGAVLGVGNGTIVHAINVERNHHEL
NPNRARVFPVNNNSSQREKESGDSRSESFSTSNCSMSSGSMETGTLVSHKVKNVGVGDPP
PSHHHTPPHQQPFNQFIQHQQRQIHNSQQSIHGESGNRQHGGKENVVLGNQVELHQQQQM
LNKSEEEDQPGKTEDRINSRYDHASLGTTNNINPSQSGNSSVLEINNSYYGKGRGGPCFD
QHGGQQSPGSGIIHSVQQNNMDQLQQNSHEGYQNNPYNHYPNYRPGYGNSGYGMMSPSRH
GNNMMGPVSNTAAANHSRAAMAAASSSGSANIGGFHRFPGQSQQHPSGATPTLNQLLTSP
SPMMRGYGSGYQDYTNPSAEQQQSSMGLTKDLSSQYGSTTRSWGGQERNHPAMSPGNNGQ
GSSRSQVPPIDAMAMKRSQLYGMGNNPYSQQQQGGGGSYPGQPYGSPFPHRYPMGMPGRG
QMGMSGMQYPQQQQQMAAQYRQQQGGMSGYCQPQGQPPYSSPPQQQPAAPTQPPYMQARP
LPQQDLSGSIDDLPTGTEVAISSAVSASGSTSSQGEQSNPAQSPFSPHMSPRLRSGPSPS
PVGSPVGSSQSRSGPISPASVPGTQMAPQTPGNMSDVGSHSTLSQSPMSQERGFPPAMQW
NTTVPQQSGQGPAMSPHSSPGGSMHPQSSYHQQQLQGGPGPSYGPQTSQYGPQGNYPRPP
NYGGTPSANYSGPGPGMSNSLGMNANSPMHGQGPGQPCGSMPAGRGLGPGASGRPHLGAN
TNTMAPTSPSMPQPAGQGQGMRPPLPSVNQEAGLGPGTNAMQGPNAGPNPSAQGRPPYAR
SPAYPGLSCPGACPRLSPHHSPSPHPHHSPSPRPPHHTQVSSAQSHPMMQQADRYGQGMT
PMPHHPGMSPRGMASSPGGPYSQQPGANTSGRMTPQGPQPPYNAPSGPMLMGGEGMVCPT
DPKPRPPEQYRESNTPGPAAEPPPKPKKTSPATMTNEKIRILYEMGVEPERQVWVDRYLA
FMEERGTPVPMLPAVGRKPLDLCRLYLCVREIGGLAMVNKSKKWRELSTHLNVGTSSSSA
SSLKKQYIQYLFAYECRVERGEEPPLEIPGETKKQAKIQPPSPANSGSLQGPHTPQSTGS
SSMTEMSEGMKLPTPATTPHATPQPGNRNSVGIRVQDPFSEVSDPAFHKRGPMPSGAPYQ
QVGGSADPSMRMQYDANKDPYEGPRKGPGGSEPYRPGQMPSGTMQDMYPRGLPSGAMPVM
GMGPGPRSQYHYGPGYDRRPDHVMGSEGGVPPPGGQNNMVPSSGDPSMYSANRYPHQRPH
GHESYGQQYPHGPMPYGSHQSGMYPQQGYKRPVGQEGMYGPAAKRHEGEAYDMQQYGGQQ
PDMHRQYGGGYMGPEHRPMQGQYPYPYSRDRMGAIQGPQQHGMMSGGPPFPSGASPEGPQ
ANMWHPRTDMGYPGPYPGRQGQGPPYPVMGRGPGDDPEGRALQDGQWTSGHPGQRQSPYP
CPSSSSMPPMASRQPPSSYQSNPAMANHIARAPSPFARPMGGPGPLSPNNGGHYMASLKK
AGMPGSMPGSHSGGMSGQGILPLHRDISFPVGSVEATLPKLKVRRRLTSKETGTPEAWRV
MMSLKSGLLAESTWALDTINILLYDDTTVSSFTLSQLPGFLELIVEYFRRSLISIFGILD
EYEVGTEGQKMLLGPITDQEEGLTVAELDSQLDEEQRDSGPEKTTANSNTEEAVPEEKEE
PVEVTLKEKVEGEEKERAATEQSQPPEPRPKQASKYDKLPVKVEEDQVEEDQELSLSRGF
TSGLLHWKAGGGDSTAHIQTHFEIRGEETNSKPTERKEREDKTETTEEERKAVVEKSMTE
TATMDDMLSAWPGSLSERNGLPGTQTQSPIFTLLEDEPRCWDEAPLSTAEPWQDALARRC
VCISNIVRGLSFIPGNDNDMSCHPGLVLILGRLVLLHHLHPQRRRMPPSYQREEEQGRAC
SKDQWWWDCLSALRENTLVTLANISGQLDLSLYPESICLPILDGLLHWMVCPSAEAQDPF
TTASCSSSLTPQRLVLECLCKLSIQDNNVDLLLATPPFSRQEKLYATLVHHVGERKSQVC
REMAVAVLSNLAQGDPTAARAIALQKGSVGILIGFLEDCVAMCQHQQGPHSLLHPAAHPQ
PPSVNMMCRAAKALLAMAKEHRTELVLYESRLLDISLSSVLSSAVAAIMCEVLFKIGRSS
NT seq
6663 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaagtggcaacagccccaacatcaactggtaagaaaaggtcgagtttaact
agcagcgtgagtcaagattttaaatctgctaaatctggagtagttggtggagctgtactt
ggggtaggaaacgggactatcgttcatgctattaatgtagaacgcaatcaccatgaattg
aacccaaacagagctcgagtttttcctgtaaacaacaattcgagtcaacgtgagaaggaa
agtggagattctagatcggagtctttttcgacttcaaattgtagcatgagttcgggaagc
atggagacgggaacgcttgtcagtcataaagtgaaaaatgttggtgtcggagatcctcct
ccatcgcaccaccacacacctccacatcaacagccattcaatcaattcattcagcaccaa
caacgccaaattcacaacagccagcagtcgatacatggagaaagtggaaaccgccaacat
ggaggaaaagagaacgttgttttagggaatcaagtggagctccatcagcagcaacaaatg
ctaaataaaagtgaggaggaggaccaaccgggcaaaacggaggaccggattaacagcagg
tacgaccatgccagtttgggaacaactaataacatcaacccgtcccaaagtgggaacagt
tcagttttggagataaataatagttattatggaaagggaagaggagggccttgctttgat
caacatggcggacaacaaagcccagggtctgggataatacattcggtacaacagaacaat
atggatcaacttcaacaaaactcccacgaaggataccaaaacaacccgtacaatcactac
ccgaactaccgacctggctacggtaatagtggatatgggatgatgagtccctctcggcac
gggaacaacatgatgggcccagtcagcaacactgctgctgctaatcatagcagagctgcc
atggctgctgcctcttcttctggtagtgcgaatattggagggtttcacagatttccaggg
caaagtcagcagcatccgtcgggggctaccccgactctaaaccagttactgacgtccccg
agccctatgatgcggggctatggcagtggctatcaagattacactaatccttctgctgaa
caacaacaatcaagcatggggctgactaaagacttgagctcccaatacggttcaacaact
cgtagttggggaggacaagaaagaaatcaccctgccatgagccctggaaacaacggacaa
ggaagcagcagatcacaggtgccaccaatagacgccatggcgatgaagcgctctcagctg
tacggcatgggcaacaacccttactcccagcaacagcagggcgggggcggctcctaccct
ggccaaccatacggatcaccttttccccaccgctacccaatgggaatgcctgggaggggt
cagatgggcatgagtggaatgcagtatcctcaacagcagcagcagatggcagctcagtat
aggcagcagcaggggggcatgagtgggtactgccagccacaaggccagcccccgtactcc
agccctccccagcagcagcctgcagcccccacacagcccccctacatgcaggcacgtcca
ctgccacagcaggacctgtctgggtctatagatgaccttcccacgggcacagaggtggct
atcagctcagcggtcagtgcttcggggtccaccagcagccagggcgagcagagtaacccg
gcccagtctcccttctcaccccacatgtcccctcgcctgcgtagcggcccctccccctcc
cccgtgggatcacccgtgggatccagccaatcgcgctccggaccgatctcccccgccagc
gtcccaggcacccagatggccccacagacccctgggaacatgtctgatgtgggttcccat
tccaccctgagccagtcccccatgtctcaggagagagggttcccacctgccatgcagtgg
aacaccacagtcccccagcagtcaggtcagggacccgccatgtcccctcactcatccccc
gggggctccatgcacccccaaagctcctaccaccagcagcaactgcaggggggccctggc
ccctcgtacggaccccagaccagccagtacggcccccaaggtaactaccccagaccccct
aactacggcgggacccccagtgccaactacagcggccccggccctggcatgagcaacagt
ctgggcatgaacgccaatagccccatgcacggccagggccctgggcagccctgtggctcc
atgcccgccgggcgaggcctgggcccgggggccagtgggcgaccccacctcggtgccaat
accaacaccatggcccccacctctcccagcatgccgcagcctgccggacagggccagggc
atgagaccacccctgcccagtgttaaccaggaggcaggtctgggtccgggaaccaacgcc
atgcaggggcccaacgctggtcccaacccttctgcacagggcaggcctccctacgcgcgc
tcccctgcctaccccggcctgagttgtcctggggcgtgccctcgcctctctccccatcac
tctccctcccctcacccccatcactctccttccccccgtcccccccaccacacccaggtc
agcagtgctcagagccaccccatgatgcagcaggctgaccggtatgggcagggaatgacc
cccatgcctcaccatccaggcatgagccccagagggatggcctccagccctggtggcccc
tacagccagcagccaggggccaacacctctgggaggatgaccccacaggggccccaacct
ccctacaacgcaccctccgggcccatgcttatgggaggagaggggatggtgtgtcccact
gaccccaaaccgagacctccagagcagtacagggagagcaatactcctggtcctgccgcc
gagcccccacctaaacccaagaagaccagcccggccaccatgaccaatgagaagattcgc
atcctgtacgagatgggcgtagagcccgagaggcaggtgtgggtggaccgttacctggcc
ttcatggaggagaggggcacgcctgtacctatgctgccagccgtgggcaggaagcccctg
gatctgtgccgcctctacctgtgtgttcgagaaataggaggactggccatggtgaacaag
agcaagaagtggagggagctgtccacccatctcaacgtgggcacgtccagcagctctgcc
agctctctgaagaagcagtacatccagtacctgtttgcctatgagtgcagggtggagcgg
ggagaggagccgccgctggagatcccgggggaaaccaagaaacaggctaagatccagcca
ccctcgccggccaactcgggctccctgcagggtcctcacaccccccagtctacaggtagc
agctccatgactgagatgtcagagggcatgaagcttcccactcctgccaccacaccacat
gcgaccccccagccaggtaacaggaacagtgttggtatccgtgtccaggatcccttctca
gaggtcagtgaccctgccttccacaagcgagggcccatgccctctggcgccccctaccag
caggttggcggtagtgcagacccctccatgaggatgcagtatgatgccaacaaggacccc
tatgaagggccccggaaggggccagggggcagtgagccctatagaccaggtcagatgccc
agcggtaccatgcaggacatgtacccccgtggtcttccctcaggagccatgccagtgatg
ggtatgggccctggcccgcggtcacagtaccactacgggcctggctacgataggagacca
gaccatgtgatgggttcggaggggggtgtgcctccccctgggggccagaacaacatggta
ccttccagcggtgacccaagcatgtactctgccaaccgatatccccatcagcggccacat
ggacatgaaagctatgggcagcagtaccctcacggccccatgccctatggctctcaccag
tctgggatgtacccacaacagggctataagaggccagtgggacaagaggggatgtacggt
cccgctgctaagcgccatgagggtgaagcctacgacatgcagcagtacggagggcagcag
ccagacatgcaccgccagtatggagggggctacatggggccggagcacaggcccatgcag
ggccagtacccttacccctacagccgagaccgcatgggagccatccaggggccccaacaa
cacggcatgatgagcggaggtcctcccttcccctccggagcctctccagagggcccccag
gccaacatgtggcaccccaggacagacatgggctaccccgggccctaccctggccgacag
ggccaggggccaccttaccctgttatgggccggggtccgggggatgacccagagggaagg
gccctccaggacggccaatggacgtccggacacccgggccaacgccagtccccataccca
tgcccctcttcctcctccatgccccccatggcttcccgacagcccccctcctcctaccag
tctaaccctgccatggccaaccacatcgctagagcccccagccccttcgcccggcccatg
gggggacccggacccctttcccccaacaacgggggccactacatggcctctctcaagaag
gcagggatgcctgggtccatgccaggctcacacagtggggggatgtcagggcagggcatt
ctacctctccacagagatatcagcttccccgtggggtcagtggaggccaccctgcccaaa
ctcaaggtccgacgcagacttacttccaaggagaccggaaccccagaggcgtggcgtgtg
atgatgtctctgaagtcaggtctgctggctgagagcacatgggcgctggacaccatcaac
atcctgctgtatgacgacaccactgtgtcctccttcaccctgtcacagctgcctggcttc
ctggagctgatagtggagtacttccgccggagtctgatctccatctttgggatcctggat
gagtacgaggtgggcaccgagggccagaagatgctgctcggaccaatcacagaccaggaa
gaggggcttaccgttgcagagcttgacagccagttagacgaagagcagagggacagcggg
ccagagaagaccacagccaacagcaacacagaggaggcggtcccagaggagaaggaagag
cctgtggaggtgactttgaaagagaaggtagagggggaggaaaaggagagggccgccacc
gagcagtcccagcccccagagcccaggcccaaacaggccagtaagtacgacaagctgcct
gtgaaggtggaggaggaccaggtggaggaggaccaggagctcagtctgtccagggggttc
acctctggcctgctgcactggaaggctggagggggggactccactgcccacatccagaca
cactttgagatacgtggcgaggagaccaacagtaagcctacagagaggaaagagagggag
gataagacagaaacgacagaggaggagaggaaggctgttgtagagaagagcatgactgag
acagccactatggacgatatgctgagtgcctggccaggctctctgtcagagaggaacggt
cttcccgggacacagacccagagccctatcttcaccctgctggaggacgagcctcgctgc
tgggacgaggcgcccctctccacggccgaaccctggcaggacgccctggcccgccgctgc
gtttgcatctccaacattgtccgcggcctctccttcatcccggggaatgacaacgacatg
tcctgccaccctggcctggtgctgatcctggggcggctggtcctgctgcaccacctgcac
ccccagaggaggaggatgcctcccagctaccagagagaggaggagcagggccgggcctgc
agtaaagaccagtggtggtgggactgtttgtcagccctcagggagaacactctggtcacc
ctggctaacatctcaggtcaactagacctgtccctctacccagagagcatttgtctgccc
atcctggacgggctcctccactggatggtgtgtccctctgccgaggcccaggaccccttc
accacggcgagctgctcctcctccctcaccccccagagactggtgctggagtgcctgtgc
aagctgagcatccaggataacaacgtggacctcctgctggccacgccgccgttcagccgc
caggagaagctctacgccaccctggtgcaccacgtgggtgagcggaagtcccaggtgtgc
cgggagatggcagtggctgtgctctctaacctggcgcagggggacccgaccgcggcgcgc
gccatcgcactgcagaagggtagcgttgggatactcatcggcttcctggaggactgcgtg
gccatgtgccagcaccagcagggacctcacagcctgttacacccagcagcacacccccaa
ccccccagcgttaacatgatgtgcagggccgccaaggctctgctggccatggccaaggag
caccggacagagttggttctctacgagagcaggctactggatatctccctgtcctctgtg
ctgagttcagccgtggcggccatcatgtgtgaagtactgtttaagattggacgctcctcg
tga
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integrated database retrieval system
