Oncorhynchus mykiss (rainbow trout): 110529648
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Entry
110529648 CDS
T07259
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110529648 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110529648 (trim54)
Ubiquitin system [BR:
omy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
110529648 (trim54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-C3HC4_4
zf-C3HC4_3
zf-RING_2
zf-RING_6
TRIM_CC
Sina_RING
Prok-RING_4
CDC37_M
CoiA_N
Motif
Other DBs
NCBI-GeneID:
110529648
NCBI-ProteinID:
XP_021467715
Ensembl:
ENSOMYG00000018612
LinkDB
All DBs
Position
8:complement(23883070..23908520)
Genome browser
AA seq
368 aa
AA seq
DB search
MNFALGYKPGQLGESSTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQAAN
PLWQSRGSKSMSTRGRFRCPSCRHEAVLDRHGVYGLQRNLLVENIIDIYKQEESSRPLNP
TKVEQQQLMCEEHDEEKINIYCLSCETPTCSMCKVFGQHKDCEVAPLQNVYKRQKTELSD
GIAILVAGNDRIKALLSQMEETCRSIQENGRRQKQSLCDKFDGLYAILEERKKELVGMIS
RQQDDKLDYIRSLMRRHGDHLEGAVKLVETAIQSMEEPQMAVFLQRIKDIFKKIGTTAKV
SSMECPEPGYESMAHLVINTANVADMLRTIDFITVRASGFQEKDGEDGYDLGEDLASLAT
GDVDYGRC
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgcactgggctacaaacctgggcaactcggggagtctagcaccatggataac
ttggagaagcagctcatctgccccatctgcctggagatgttcaccaagcctgtggtcata
ctgccctgccagcacaacctctgcaggaagtgtgccaatgacgtcttccaggctgccaac
cccctgtggcagtctcgggggtccaagtccatgtccacaaggggtcgtttccgctgccca
tcatgtcgtcatgaggcagtgttggaccgccatggtgtgtatggcctacagaggaacctg
ctagtagagaacatcatagacatctacaaacaagaagagtccagcaggcccctgaatccc
accaaggtggagcagcagcagctgatgtgtgaggagcatgacgaggagaagatcaacatc
tactgcctgagctgtgagacgcccacctgctcaatgtgtaaagtgtttggccagcacaag
gactgtgaggtggcccccctgcagaatgtctacaagagacagaagacggagctgagtgac
ggcatcgccatcttggtggctgggaacgaccgtatcaaggccctcctctctcagatggag
gagacctgcaggtccatccaggagaacggccgtcgtcagaagcagagtctgtgtgataag
tttgacgggctgtatgccatcctggaggagaggaagaaggagttggtgggtatgatcagc
cgccagcaggatgacaagctggactacatccgctccctcatgcgtcgccacggagaccac
ctggagggagccgtcaagctggtggagacagccatccagtccatggaggaaccacagatg
gccgtgttcctacagagaatcaaggatatatttaaaaagatcggcaccactgccaaggtg
tccagtatggaatgtccagagccgggctacgagagcatggcccatcttgtcatcaacaca
gcgaatgtggcagacatgctgaggaccattgacttcatcacagttagggcctcaggtttc
caggaaaaggacggggaggatggttatgatctgggtgaggacttagcatcgctggcaaca
ggggatgtagactatgggcgatgctag
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integrated database retrieval system
