Oncorhynchus mykiss (rainbow trout): 110530358
Help
Entry
110530358 CDS
T07259
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
omy04040
]
110530358
Ion channels [BR:
omy04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
110530358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
Ank_KRIT1
PKD_channel
Motif
Other DBs
NCBI-GeneID:
110530358
NCBI-ProteinID:
XP_036841885
Ensembl:
ENSOMYG00000011784
LinkDB
All DBs
Position
8:complement(65520250..65546632)
Genome browser
AA seq
1113 aa
AA seq
DB search
MSSSKTDLMQNKTYHLSMIHGDNATEISAKIFEWSLQGDTVALGEHSALLGVRDQANASP
LHYATSHGHISTIQLIVQLTGPDELNARDEEGNTPLHWAVQRTQRESCACLLDLGADSNI
LNLRLMSPLHLAVSLGHNPLVELLLSHSNTDSNLMGGQGNTPLMLACSVDNHEAVRLLFK
YRARLCQQNKLGHYPIHAAAFAGAKKSMLVVLQKGEEMGFSTEMHINYVDKSFSTPLHLA
IHGGNLEAIKLCIEQGAKIDQKQCDKSTALHFACTQGASEAVKLMLSAYDRVCDVINIPD
GASQTPLHKATIFDHVGLAEYLISKGADINSIDCKGHTPLLLATSCSAWKTVGLLLTHGA
NLKIKDKYDCNFLHLTILQPKGLKNLPPEVLQCSNVRELLGAEDKEGCTPLHYACRLGIP
ESVTDMLGLNVSLDQKSKQKKSALHFAAEYGRINTCHRLLEWMTCTRLLNEGDERGMTPL
HLASRGGHIKVLELLLRKGALFHSDSKGWTCLHHAAAEGYTQTMIILLQSNIKLLDKTDE
DMNTALHLAAREGHAAAVTLLLGRGAQMTLNKSDASFLHEAVLNGRKDVVFAVIHNERCA
EAMLLFEVKSTKRCVVMDMIEFLPESFKHLLDTCVKESDDDVNSYNYSIEYTFKWLQAPI
HVIKLGKTDKSYYFQPLTALNSMVQFNCIELLTHPVCKKYLEMKWNAYGIKVHLLNLAVY
SLGLGPLTHIIHTLKPILNTNVTRTTSPSSSVSMVTTSLDKQCYLITTCMFLILAMNLYT
VVKELVQIVQQGSKYFRDVTNALDWGAAVSSLLFVIPLLMDFKETWHWEAGVVAVLLSWI
NFLLYFQRFERVGIYVVMFLEIAKTLLSIIVLFFFLLLAFALAFYALIQDQNVVDSGSSM
LLAIMQVFVMMVGELNYQENILKPFLNGILPFPSLTYAIFVMFTFAVPILLMNLMIGLAV
GDIAEVQANAVLKQMGMQIELHTSLEEKMPYWLMKRVDQASLTEYPNRAYGRKREMFYAM
LGMGHERIRLSPTSPPSTPMEQEISKQKYRLKEMSNVIEKQHNLLKLIVQKMEICSEVEE
EHDGPQLFQGYRDKPLPSQSKWNPLPRALGARK
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagctcttcaaagaccgacctgatgcagaacaagacataccacctgtctatgattcat
ggagataatgctacagagatttctgccaaaatatttgagtggtctctgcaaggtgacact
gtagcgttgggagagcactcagccctgctgggagtccgtgaccaagccaatgccagccct
ctgcattacgccacctcacacgggcacatcagcaccatacagctcattgtgcagttgact
ggtccagatgaactgaatgcccgtgatgaggagggcaacactccattgcactgggctgtg
cagaggacccagagagagagctgtgcttgcctgctggacctgggggcagactcgaacatc
ctcaacctccgcctcatgtctcccctacacctggctgtcagtctcggacacaaccctctc
gttgagctgttactgtctcacagcaacacggattccaacctgatgggaggccaggggaac
acacctctaatgttggcctgctcggttgataaccatgaagctgtccgtctactttttaaa
tacagagccagactatgtcaacagaacaagctgggacattatccaattcacgcagcagcg
tttgcgggggctaaaaaatctatgctggtggttcttcagaaaggtgaggagatgggtttc
tcaactgaaatgcacatcaactacgtggacaaatcattcagcactcctcttcatctggcc
atccatggaggaaacctggaggcaatcaaactctgcatagaacagggagcaaaaattgac
caaaaacagtgtgacaaatccacagccctccactttgcctgcacccagggagcatccgag
gccgtcaaactcatgctatcggcatatgatagagtctgtgatgtcatcaatatcccagat
ggagctagccaaactccactgcataaggcaacaatatttgaccatgttggattggctgag
tacctcatttcaaagggtgcagacattaattccattgactgtaagggtcatacgccactg
cttctggcaacaagctgtagtgcatggaaaacagtgggccttcttcttacacatggggct
aatttgaaaataaaagacaaatatgactgcaatttccttcaccttaccatcttgcagcct
aaaggtctgaaaaaccttcctccagaagtcttacagtgcagcaatgtgagagagctcctg
ggtgcggaggacaaggagggttgtactcccctgcattacgcctgcagactgggaatccca
gagtcagtgacggacatgctcggactcaacgtctcgctagatcagaagtctaagcagaag
aaatctgcactgcatttcgcagccgagtatgggaggataaacacctgccacagactcctg
gagtggatgacctgcaccaggctgctgaacgagggagatgagagggggatgactcccctc
cacctggcatcccgaggcggccatattaaagtgctggagctactgctgcggaaaggagct
ctgttccacagtgattctaaaggttggacctgtctacatcacgctgcagcagagggatat
acccagaccatgatcatactcctgcaatcaaatatcaaactgctggacaaaacagatgaa
gacatgaacacggcgttacatctggctgccagggagggccatgcggctgcagtgacactg
ctcctgggcagaggggcccagatgacgctcaacaagagtgatgcctccttcctccacgaa
gctgttctcaacggcaggaaagacgttgtcttcgctgtcatccacaatgagagatgtgct
gaggctatgctattgttcgaagtgaagtcaactaagcgatgtgttgtcatggacatgata
gagttcctgcctgagtcattcaaacatcttttggacacttgtgtgaaggagtcagatgat
gacgtgaatagttacaactactctatcgagtacactttcaaatggctccaagctcccatt
catgtcattaagcttggaaaaacagacaaaagctactacttccagcctctcactgctctg
aactccatggtgcaatttaattgcatagagcttctgacccatcctgtctgcaagaagtat
ctagaaatgaaatggaacgcctatggtatcaaagtgcatctgctcaatctggctgtctac
tcacttggtctggggcctctgacacacatcattcatactctgaagcccatcctcaacacc
aatgtcacccgtactacatcaccatcatcatcagtaagcatggtgaccacctcccttgat
aagcaatgctatcttatcaccacctgcatgttcctgattcttgccatgaatctgtacaca
gttgtcaaggagctggtgcagatagttcagcagggttcaaagtacttccgtgatgtgacc
aatgcattagactggggtgctgccgtcagttctctgttgtttgtgatccctttactgatg
gacttcaaggagacatggcattgggaggctggggtagtggcagttcttctatcctggatc
aactttctcctctatttccaacggtttgaacgtgttgggatctacgtggtgatgttttta
gagattgcaaaaactcttttaagcatcattgtactgttcttcttcttgctgcttgcattt
gcattggctttctatgccctgatacaagaccagaacgttgttgacagtggatctagcatg
ctgctagcaatcatgcaagtatttgtcatgatggttggagaactcaactaccaagaaaat
atcctgaagccatttctgaacgggattctgccattcccttctttgacctatgccattttt
gttatgtttaccttcgctgtgcccattctcctcatgaacctaatgattggcttggctgtt
ggtgacatagcagaagtacaggcgaatgctgtgctgaagcaaatgggaatgcagattgag
cttcacactagtctggaggagaagatgccgtactggttaatgaagagggttgaccaggcc
tctctcactgagtaccctaacagagcctacggcagaaagagagaaatgttctatgcaatg
ctgggtatggggcatgagagaatacgtctcagccccacttcccctccatctacacctatg
gaacaggaaatcagtaaacagaagtacaggctgaaggagatgtctaatgttatcgagaag
cagcacaacctgctgaagctgatcgttcagaagatggagatctgttcggaggtggaggag
gagcatgatggtccacagctgttccagggctacagggacaagcccctcccctcccagagc
aaatggaaccctctgccgagggcactgggagctaggaagtaa
DBGET
integrated database retrieval system
