Oncorhynchus mykiss (rainbow trout): 110530602
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Entry
110530602 CDS
T07259
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03015
mRNA surveillance pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110530602
09122 Translation
03013 Nucleocytoplasmic transport
110530602
03015 mRNA surveillance pathway
110530602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110530602
03041 Spliceosome [BR:
omy03041
]
110530602
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110530602
Spliceosome [BR:
omy03041
]
Complex C
Other components
EJC/TREX
110530602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
110530602
NCBI-ProteinID:
XP_036842134
LinkDB
All DBs
Position
8:complement(74861641..74888001)
Genome browser
AA seq
1907 aa
AA seq
DB search
MADLEDVKLDGRPLQSLRVADLKAALEERGLPKSGQKNTLVKRLKGALMLENLQRTSHHH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAVEDDDTDKEDHTQDNNSAA
CAAPDQDVAPVLVDQRKLFGLSEGKGLAGPAREGEGHMSRDGHVSPPPAPTSAAVASLAV
RVAVDEQRPERVPTSSQVPADSDDDGADEDWDSGARRRNLGEPPRGQLARARSGGSRQHP
QHIPPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGEPPARQRTSSTSSSGSSSSG
SCSSSPDPQSKTERKPGPLTLLARKMASEGAFSGVGWHGRGDAERQDNNAATATMSSGRG
PQEGTVSAITHTTNAAASLPFPRLVPVTNQGALGGHLPHSEVPVSVLRPTIMEERDAAWP
QENNKEKDLQAESEREKSPEQERLGAVEQESLERQRVFEQQHAVEQERERALERERKERE
KALSRERKEREKALEREKALEQERKERALARERAQALEREEEEREKALAKEREEREKAMQ
LEKQRAMERERALEQEREKEKALEREEKALESERKEKALESERKEKALESERKEKALERE
RKEKALEREREEEKALEREREQEKALVLERMERVKVLEREREQEKALVLERMERVKVLER
EREQEKALEREREQEKALVLERMERVKVLEREREEEKALEREREQEKALVLERMERVKVL
ERERMERVKVLEREREEEKALVLERMERVKVLELERMERVKVLELERQKALEREMKEKER
EEKVRALEQERIERKKALEKERTMEKEREERERALEQEKVLQREKEERERALEQEKALQR
EKEARERALEQEKALHREREARERALEQEKALHREREARERALEQEKALHREKEERERAL
EQEKALQREKEEKERALEQEKALHREKEEKERALEQEKALHREKVERERALEQKALQREK
EERERALEQKSSQREKEERDCHLPPWKRSCEFGLTPLPTPPLSTGAGKMAATEEGGEPKV
PSLPQKALRDNRPAESGTPLSQSLATSLSPQSSFKKFRFLRDPIVLSQSSASGVIKRPRT
FSESPHPQSLALQSPSKPGEPEQEGTQQGAQPSAWQTAPKKPASQGVPVSGADTSGTTGP
ERETPVIATLGKSPEEEKGKSLVSEEHVQAHREETDKQAVGEMAREANAPSGPAGAVLPP
SPQPVEGKVEKGRERSQKKEEKLGRRSSSSNDSSDSDSGSSSSGSSSSSSSQGKTHTTPS
GRKPEKPQTNTISQDTETVSQPDDPTEAPKAPQHKKQVSGEEEEDVNIDGARHRKKPFLG
IHAGEDNGQKDSEGEEVKTDTTSARPVGENQHHPRQRTVECQGEVNEAAMAKPKKAPESS
EERVTPKAFTARRISLSSSKASPGAVTAEGETESGAGRKRRWGSSTAVTTKKSSMSITTD
SLKSLIPDIRLCPGQEMVVDLHPGEDHLSGVEEEGRERGEQDLKIRRTVTQVVPSVTQEN
GQKESKRSEHEEEDREDGREVKGDREEKMDGSFQRDSMETQCPSPPSHDMEMKTVTPSDT
LIRRSISQQKSGVSITIVDPVRTAKQPSPPRGKVSNIVHVSNLVRPFTLSQLKELLGRTG
TVHEDGFWIDKIKSHCYVTYSSAEESIATRAALHGVKWPQSNPKFLNLDFIQQEELDFHR
GLPPPERAGEGERGAAAVPGRVAALPPLLPKREQWAEREREMEHRERTRAEREWDRDKVR
DFGPEKPGEEAVPRRSRSRERKRKERKMDKKEKAADEPPVKLLDELFKKTKAAPCIYWLP
LTEEQFSQKETARQERMKEREKRRKEQQEEVEKKREEDRKERMKAASAAFGERGEGERYR
ERERDGGRDGESDKHREDCYRRPGGSSTGGGRRSRSHSDPPHHDRRR
NT seq
5724 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttaaactggacgggaggccgctacaatcacttcgcgtggcg
gatttgaaagctgctttagaggagcgcggacttcctaaaagcggacagaaaaatactctc
gttaagagactcaaaggggctctcatgctggagaacctccagagaacctcacaccatcac
ataggactgcagccaaactctcagattggtgaagagatgagccagaacagcttcataaag
cagtatttggcaaaacagcaggagctcttgaggcagcgtctggagagagaggcccgggaa
gcagttgaagatgatgatacagacaaagaggaccacacacaggacaataacagcgctgcc
tgtgctgccccagaccaggatgtcgcacccgtgttggttgaccagcgcaaactttttggc
ctctcagagggaaagggactagcaggcccagcaagagagggagaggggcacatgtccaga
gacggccatgtgtctcctccacctgcccctacctctgctgctgttgcctctctggctgtg
cgtgtagctgttgacgagcagagaccagagagagtcccaacctctagtcaagtcccagca
gatagtgatgatgacggcgctgatgaggactgggatagcggtgccaggaggaggaatcta
ggagagccaccaagaggccaactagcaagagcaaggtctggaggatcccgccaacaccca
cagcacattccccccctattgtctccgcagcttcgacagcctacccctcctccctcccct
cccccagagttatcattcccactgcctgatacccctaaacaaagcccccctagtccaggt
gagcccccagctaggcagcgtacttccagtacctccagctctggctcctctagcagtggc
agttgtagtagcagcccagatccacaaagcaaaacagagcgcaagcctggcccactgacc
ctgctggcacgcaaaatggcatcagagggggctttctctggagttgggtggcatgggcgt
ggggatgcagagaggcaggacaacaatgctgcaactgcaacaatgtcttctggtagaggt
cctcaagagggcacagtgtctgccatcacccacacaaccaatgctgcagccagtttgccc
ttccccagactggttccagtaacaaaccagggagctcttggaggccatctcccccacagt
gaagttcctgtgagtgtgcttaggcccactattatggaagagagagatgctgcatggccg
caagaaaacaacaaggaaaaggacctgcaggcagagagtgaaagagaaaaatcccctgag
caagagcgacttggtgccgtggagcaggaaagcctggagaggcagagagtatttgagcaa
cagcatgctgtggagcaagagagggaaagggctttggagcgagagaggaaggagagagag
aaagctttgtcgcgagagcggaaggagagggagaaggctttggagcgagagaaagctttg
gagcaagaaaggaaggagcgggctttggcgcgagagagggcgcaagctcttgaacgagaa
gaggaggaaagagagaaagctttggcaaaagagagggaagagcgagagaaagctatgcaa
ttagaaaagcagagagccatggaacgagagcgagctttggagcaggagagagagaaggag
aaagctttggagagggaggagaaggctttggagagcgagaggaaggaaaaggctttggag
agcgagaggaaggaaaaggctttggagagcgagaggaaggaaaaggctttggagagagag
aggaaggaaaaggctttggagagagagagggaggaggagaaggctttggagagagagagg
gagcaggagaaggctttggtgctagagcgtatggagagggtaaaggttttggagagagag
agggagcaggagaaggctttggtgctagagcgtatggagagggtaaaggttttagagaga
gagagggagcaggagaaggctttggagagagagagggagcaggagaaggctttggtgcta
gagcgtatggagagggtaaaggttttggagagagagagggaggaggagaaggctttggag
agagagagggagcaggagaaggctttggtgctagagcgtatggagagggtaaaggttttg
gagagagagcgtatggagagggtaaaggttttggagagagagagggaggaggagaaggct
ttggtgctagagcgtatggagagggtaaaggttttggagctagagcgtatggagagggta
aaggttttggagctagagcggcagaaagctttggaacgggagatgaaggagaaagagagg
gaggagaaggtgagggctttggagcaagaaagaatcgaaaggaagaaagcccttgagaaa
gaaagaaccatggagaaagaaagagaggagagggagagagccttagaacaggagaaggtc
ctacagagagaaaaagaggagagggagagagctttggaacaggagaaggccttgcagaga
gagaaggaggcgagggagagagctttggaacaggagaaggccttgcacagagagagggag
gcgagggagagagctttggaacaggagaaggccttgcacagagagagggaggcgagggag
agagctttggaacaggagaaggccttgcacagagagaaagaggagagggagagagctttg
gaacaggagaaggccttgcagagagagaaagaggagaaggagagagctttggaacaggag
aaggccttgcacagagagaaagaggagaaggagagagctttggaacaggagaaggccttg
cacagagagaaagtggagagggagagagctttggaacagaaggccttgcagagagagaaa
gaggagagggagagagctttggaacagaagtcctcgcagagagagaaagaggagagggat
tgtcatcttcctccatggaagcgtagttgtgagtttggtcttacccccctgcctactcct
cccctctccacaggagcaggtaagatggcggcaacagaggagggtggggagcccaaagtg
ccatccctaccccaaaaagcattaagagacaaccggccagctgaatctggtacgcccctg
tcacaatctctagcaacgtctctgtcaccccagtcctccttcaagaagttccgtttcttg
agggaccccatagttctatcccagtcttctgcatccggggtcatcaagaggccccgtaca
ttctctgaaagcccccatcctcagtccttagctctccagtcccccagcaaacctggggaa
ccagagcaggaaggtactcagcagggggcccagccttctgcttggcaaacagcaccaaag
aagcctgcaagtcagggggtccctgtttctggagcagacacgtcggggacgacagggcca
gagagggagaccccagtgattgccacactgggcaagagtcctgaagaagaaaagggtaag
agcctggtctcagaggagcatgtccaagcacatagagaggagacagacaaacaggcggtg
ggagagatggccagagaagcaaacgccccctcaggtccagcgggagctgtgctacctccc
tcaccccaaccagtggaaggcaaggtagaaaaaggaagggagagaagtcaaaagaaagaa
gaaaagctgggaagacggtcttcctcgtcgaatgactcctcagattctgactcagggtcg
tcgtcctcaggttcgtctagttcatcatcgtcccaggggaaaacacacaccactcccagt
ggtagaaagcctgagaaacctcagacaaacaccatatcccaggatacggaaacggttagt
caacctgacgatccaactgaggccccaaaagccccacagcataaaaagcaagtatctggg
gaggaggaagaggacgtaaacattgatggagccagacacaggaagaaaccattccttgga
atacatgcaggagaagacaatgggcagaaggacagcgagggagaggaggtaaagacagac
actacaagtgctcgaccagtcggcgaaaaccagcatcacccacgacagagaacggttgaa
tgtcaaggggaggtgaatgaggctgccatggctaagcctaagaaggctcctgagagcagt
gaggagcgtgtgacaccaaaagcattcacagcccgtaggatctcccttagcagcagcaag
gcctctccaggtgctgtcactgcagagggcgaaacagagtctggggctgggaggaagagg
cgatggggatccagcactgcagtcacaaccaagaaatcatccatgagcatcaccacagac
tctctgaagtctctgatcccagacatcagactgtgtccaggccaggagatggtggtggat
ctgcacccaggggaggatcacctctctggggtggaggaggagggcagggagcggggtgag
caggacctcaagatcagacgcacagtcacacaggtggtcccgtcagtgacccaggagaat
ggacagaaggagtccaagaggagtgaacacgaggaggaagaccgagaggatggaagggag
gttaaaggagacagagaggagaagatggatggctcattccagagagactccatggagaca
caatgtccctctccccccagccatgacatggagatgaaaacagtgacccccagtgacaca
ttgatccgtcgctccatcagccagcagaagtctggcgtgtccatcaccatagttgaccct
gtccgcacggccaagcagccctctcctccacgaggcaaagtgtccaacatcgtccacgtg
tccaacctggttcgtccgttcaccctgagccagctgaaggagctgctcggtaggaccggc
accgtgcacgaggacggtttctggatcgacaagatcaaatctcactgctacgtcacatac
tccagtgcagaggagtcaattgccactcgtgcagccctgcatggggtgaaatggcctcaa
agcaaccccaagttcctcaatttggacttcattcagcaggaggagctggatttccacaga
ggcctgcctccccctgagagggctggggagggtgaacggggggctgcggcggtgcctggt
cgggtggcggccctgccccctctcctgcccaaacgggaacagtgggcggagcgagagcgt
gagatggagcacagggagaggacccgggctgagagggagtgggacagggacaaggtccgg
gactttggtccagaaaaacctggagaggaagcggtccccagacgatcccgctccagagag
aggaaacgcaaggagaggaagatggacaagaaagagaaagctgcagatgaacctcctgtc
aaactgctggatgaactgttcaagaaaaccaaagcagccccttgtatatactggctcccc
ctcacagaagagcagttttcacagaaggagacagctcgacaagagcggatgaaggagaga
gagaagaggaggaaggagcagcaagaggaggtggagaagaaaagggaggaagatcgcaaa
gaaaggatgaaagccgcgagtgccgcatttggagaaagaggcgagggggagcggtacaga
gagcgagagagagatgggggaagagatggagagagtgacaaacacagagaagactgttac
cgcagacctgggggcagcagtacaggggggggcagacgctcccgcagccacagtgacccc
ccacatcatgacagacgacgctag
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