KEGG   Oncorhynchus mykiss (rainbow trout): 110530843
Entry
110530843         CDS       T07259                                 
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    110530843
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:omy03400]
    110530843
DNA repair and recombination proteins [BR:omy03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     110530843
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_SCAP NBCH_WD40 Beta-prop_SPT8 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_DCAF12 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_DCAF4 WD_LRWD1 Beta-prop_Vps41 WDR54 Beta-prop_IP5PC_F WD40_RFWD3 Beta-prop_HPS5 Beta-prop_NUP159_NUP214 RAWUL WD40_like Nucleoporin_N Tfb2_C
Other DBs
NCBI-GeneID: 110530843
NCBI-ProteinID: XP_036842485
Ensembl: ENSOMYG00000011393
LinkDB
Position
8:85124558..85144377
AA seq 681 aa
MAAHHRQNAAGRRKVQVSYVIRDEVEKHNRNGVNALQLDPVLNRLFTAGRDSIIRIWSVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAQKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCAKLMKLKGHSDNVKSLLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEAFTHIYSGGRDKKIFCTDLRNPDIRVLIGEEKAPVLKM
ELDRTADPPPVIWVSTTKSSVNKWCLKGIHNFRASGDYDNDIIAPLTPLCTAPEQVIKGG
ASIIQCHILNDKRHIVTKDTNNNVAFWDVLKACKGEDLGKVEFDEEIKKRFKQVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSSDGSDPKLNLGGLLLQALLEFWPRTHIN
PMDEEENEVNHAAVNGEQETRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETE
SMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVME
HVYEKIINLDTESQTTASSLAANDKPGETEKDEDMALMAEEKIELICQDQVLDPNMDLRT
VKHFIWKSGGDLTLHYRQKST
NT seq 2046 nt   +upstreamnt  +downstreamnt
atggcggcccaccacagacagaatgccgctgggcgaaggaaagtacaggtatcttatgtg
ataagagacgaggtggagaagcacaatcgcaatggggtgaatgctcttcagctggaccct
gtactgaaccggctcttcacagctggaagagactctatcatcaggatatggagtgtcaac
cagcacaagcaggacccttacatcgcttccatggagcaccatacagactgggtcaatgac
atcgtcctctgttgcaatggaaagacattgatctctgcttcatcagacacgacagtgaaa
gtgtggaacgcacagaaaggattctgcatgtcaacgttacggactcacaaggactatgtg
aaggcattggcatatgctaaagacaaggagctggtggcgtcagcagggttagacagacag
atcttcctgtgggacgtcaacacactaacagcactgactgcctccaacaacactgtcacc
acgtcgtccctcagtgggaacaaagactccatctacagcttggctatgaaccagatgggg
acagtcatcgtatctggctccactgaaaaggtcctgagagtatgggaccctaggacgtgt
gctaagctgatgaagctgaaaggccactccgacaacgtcaagtcactgttgctgaaccgg
gacggcacacagtgtctgtcaggcagctcagatggaaccatcaggttgtggtctctgggt
cagcagaggtgtatcgctacgtatcgggtccacgacgagggagtgtgggccctgcaggtg
aacgaagccttcacacacatctactctggaggcagagacaagaagatcttctgcaccgac
ctgaggaaccctgacatcagagtactcatcggtgaggagaaggcccctgtactgaagatg
gaactggacaggacagctgaccctcctcctgttatctgggtctctaccaccaagtcatct
gttaacaaatggtgtctaaagggaatccacaacttccgggcgtctggggattatgacaat
gacatcatcgcccccctgaccccgctgtgtacagcgcctgaacaggtcatcaaaggaggg
gccagtataattcagtgtcacattctgaacgacaagaggcacatcgtcaccaaagacacc
aacaacaatgttgcattctgggacgtgctgaaagcctgtaagggagaggacctggggaaa
gtagagtttgatgaagagatcaagaagaggttcaagcaggtctacgtcccaaactggttc
tctgtcgacctcaagacagggatgctgaccatcacgctggatgagagtgactgcttcgct
gcctgggtgtctgctaaggatgctggcttctcaagctccgatggatcggacccaaagttg
aaccttggtggactgctacttcaggccctgctagagttctggcccaggacgcacatcaac
cccatggatgaggaggagaacgaggtcaaccatgcagcagtaaatggggagcaggagacg
cgggtgcagaaggggaatgggtacttccaggtgcctccacacactccagtcatcttcgga
gaggcaggagggaggactctgttccgactgttgtgtagggactcgggtggggagacggag
tctatgttactgaatgagacagtcccacagtgggtcatagacatcaccgtggacaagaac
atgccgaaattcaacaagatcccgttctacctccaaccccactcttcttctggagccaag
acactgaagaaggaccgtctgtctgccagtgacatgctgcaggtgaggaaggtgatggaa
cacgtctatgagaagatcattaacctggacactgagtcccagaccactgcttcctccttg
gcagccaatgacaagccaggagagacggagaaggacgaggacatggccctcatggccgag
gagaagattgaactgatatgtcaagaccaggtcctggacccaaacatggacctgcgaact
gtcaagcattttatctggaaaagtggaggggacttgacgcttcactataggcagaaatct
acgtga

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