Oncorhynchus mykiss (rainbow trout): 110530919
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Entry
110530919 CDS
T07259
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110530919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
omy03041
]
110530919
Spliceosome [BR:
omy03041
]
Complex C
Other components
Step II factors
110530919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WDR55
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WD40_RFWD3
Beta-prop_CAF1B_HIR1
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_VPS8
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_ACSF4
Beta-prop_DCAF4
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
110530919
NCBI-ProteinID:
XP_036842764
Ensembl:
ENSOMYG00000003027
ENSOMYG00000003054
ENSOMYG00000003068
ENSOMYG00000003081
LinkDB
All DBs
Position
8:complement(40132191..40164976)
Genome browser
AA seq
593 aa
AA seq
DB search
MAATFVSYWSDSDNETKSHVNPEKVDPDALAHLQPLKSGKTMSLSVLNSAPEVAVKEAVE
TGVHLDPSLKEVTYNPTYETMFAPEFGPVNPYKSKRMAAPRNMLSGYAEPAHVNNFMFEQ
QRRTFSTFGYALDPFVDTSQNSSSSYIGAVDEAEKKKGLTVFEVGPKKTDKRKKVQGGEA
NDIDIDNYLGPWAKYVDEKDGAKPSEVEQKELDEITAKRQKKGRNGEEAPAAEKTILHVK
DAYDYQGRSYLHVPQDVGINRRTADIPDKCYLPKKQIHVWSGHTKGVSAIRLFPVSGHLL
LSCSMDCKVKNSVAADRHSKAVRDICFNNTGSQYMSAAYDRYLKLWDTETGQCISRFTNR
KVPYCVKFNPDEDKQNLFVAGMSDKMIVQWDVRTGEVVQEYDRHLGAVNTITFVDENRRF
VSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNR
FRLNKKKIFKGHMVAGNACQVDFSPDMSYVVSGDADGKLNIWDWKTTKLYHRIKAHDKVC
ISALLLGQTDQTLGLETWGCRGTPSHNLMAAGIQSCFNSVYISTPSEEGTLVD
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccttcgtttcgtactggagcgattcagataatgagaccaaatctcatgtt
aatcccgaaaaggttgaccccgatgctctggcacatcttcaaccgttgaaatctggcaaa
acaatgtcactgtctgtcctcaattcagctcctgaggtcgccgtaaaggaggctgtggag
actggcgtacatctggacccctctctcaaagaggtcacctacaaccccacatatgaaacc
atgtttgcgccagagtttggtcctgtcaacccatataaaagtaaacggatggctgcaccc
aggaatatgctgtctggctatgcagagcctgctcacgtcaataactttatgtttgaacag
cagaggaggaccttctccacctttggctatgctctggatccgtttgtggatacaagccaa
aactcctccagtagctacatcggtgcagtggacgaggcagagaaaaagaaaggattgact
gtgtttgaggttggcccaaagaagactgacaagaggaaaaaggtgcaaggaggtgaagcg
aatgacattgacattgacaattacctcgggccctgggcgaaatacgtggatgaaaaggac
ggtgccaaaccatcagaggtggaacagaaggagctggacgagatcacagccaagaggcag
aagaagggaaggaacggggaagaggctccggcggcggagaagaccattctccatgtcaaa
gatgcgtacgactaccaggggaggtcatacctccacgtaccccaagacgtgggcatcaac
cggcgtactgcagacatcccagacaagtgttacctgcccaagaaacagatccacgtctgg
tctggacacaccaagggggtcagtgctatccgtctgtttcctgtgtcaggtcacctgctg
ctctcctgctctatggactgtaaggtcaagaactctgttgcggcggaccgccacagtaaa
gcagtgcgggatatctgctttaacaacactgggtctcagtacatgagtgcagcctacgac
cgctacctcaaactctgggacaccgagacaggccagtgtatctcccgcttcaccaacaga
aaggtgccatactgcgtcaagttcaacccagatgaagacaagcagaatctgtttgtggct
ggcatgtctgataagatgattgttcagtgggacgtgaggacaggagaggtggttcaggag
tatgaccgtcacctgggagcggtcaacaccatcacatttgtggatgagaaccgccgtttc
gtcagcacatctgacgacaagtccctccgcgtgtgggagtgggacattcccgtggacttt
aagtacatcgcagaacccagtatgcactcaatgcctgctgtaacactctcacccaatggt
aagtggctggcctgccagtccatggacaaccaaatcctgatctttggagcccagaaccgt
ttccgtctgaacaagaagaagatcttcaagggccacatggtggctggcaatgcctgccag
gtggacttctccccagacatgagctatgtggtgtctggcgatgcggatgggaagcttaat
atctgggactggaagaccaccaagctctatcaccggatcaaggcccacgacaaggtgtgc
atcagcgccctgttgctgggacagacagatcaaactctgggactagaaacgtgggggtgc
agagggactccctctcataatttaatggcagctggtatccagtcctgttttaactcagtg
tatatttctacaccatctgaagaggggacactggtggattga
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