Oncorhynchus mykiss (rainbow trout): 110531014
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Entry
110531014 CDS
T07259
Symbol
lig1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03030
DNA replication
omy03410
Base excision repair
omy03420
Nucleotide excision repair
omy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110531014 (lig1)
03410 Base excision repair
110531014 (lig1)
03420 Nucleotide excision repair
110531014 (lig1)
03430 Mismatch repair
110531014 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
omy03032
]
110531014 (lig1)
03400 DNA repair and recombination proteins [BR:
omy03400
]
110531014 (lig1)
Enzymes [BR:
omy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110531014 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
110531014 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
110531014 (lig1)
DNA replication proteins [BR:
omy03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
110531014 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
110531014 (lig1)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
110531014 (lig1)
NER (nucleotide excision repair)
Other NER factors
110531014 (lig1)
MMR (mismatch excision repair)
Other MMR factors
110531014 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
110531014
NCBI-ProteinID:
XP_036842379
LinkDB
All DBs
Position
8:81666646..81692412
Genome browser
AA seq
1041 aa
AA seq
DB search
MQRSISSFFQPKTGKEKESKKSDGPGKDEPVKDKPEPIKRPLKVQNGVHEEPDSPVKKFT
KRSRQILDSDDEAPAGIEQEPEDKAVQPKDEVFKAVTNPLSPASPVTSSASPTPGTPDTP
TSISPSGIPKRRTARKQFPKRKLDSRSGSEKEEEEQGQQNKRAKVEETQDSTENEEEAMD
VGGENSVDKPEVAQNNPEEKETDEEKTKDKEKEKALDVKVTATEEEKGKSEKAKERSPKE
RSPKGQKVKETSPKGQKVKETSPKGQKVKERSPKERSQKVKETSPKGQKVKERSPKERSS
KGQKVKERSPKGHKSVKDEKDMKEEKVSESPQAKKAPTISSFFAPRKAAVKMEKPEKSER
DGKEKSEGKEKSKGKEKREERGVXKTAQAQYDPSRPNYHPVDHACWSRGQRVPYLAVART
FEKIEEDSGRLRNIETLSNLLRSVIILSPEDLLCCVYLCLNQLGPAYMGLELGVGETVLM
KAVAQATGRQLDKIKAEAAEKGDLGLVAESSRNNQRIMFQPANLIAGGVFSKLKDIGNMS
GNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLSPPGQD
FPPAVIDAGKGMSAEKQKAWIEEKSLLLKQTYCEMPNYDVIIPVILKEGIDELPNHCKLT
PGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNT
TKYPDIISRIHTVKNESVISCVLDTEAVAWDREKKQIQPFQVLITRKRKDVAAADIKVQV
CVYAFDLLYLNGESLVKQPLSCRRALLKKSFQEKEGEFVFARAIDSDNTDAIAEFLEQSV
RDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTMDLCVIGAYLGKGKRAGTY
GGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKEHILPKPRPYYRVDQSTEPDLW
LDAVQVWEVKCADLSLSPIYKAGMGLCDPEKGISLRFPRFLRIRDDKKPEEATSGGQIAD
LYRKQQVVQNQGDKADLEDYY
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa
aaaagtgatggaccggggaaagacgagccggtgaaagacaagccagaaccaatcaaaagg
cctctcaaagttcagaatggggtccatgaagagcctgattcgccagtgaagaagttcact
aaacgcagtcgtcagatcttggacagtgatgatgaggctccagccggaatagaacaggag
ccagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgttaccaaccccctg
tcccccgcctctccagtgacgtcatccgcctcccccacccctggaacccctgacaccccc
acttccatctcaccctccggaatccccaaacgccgcaccgcaaggaagcagttccccaag
agaaagctggacagcaggagtggcagtgaaaaggaggaggaagaacaaggacagcagaat
aaaagggcaaaggttgaggagacgcaggacagcaccgagaatgaagaggaagcgatggac
gtgggaggagagaacagtgtggataagcctgaggtggcgcagaacaacccggaggagaaa
gagacagatgaagagaagaccaaagataaagagaaggagaaagcacttgatgtgaaagtg
accgcgaccgaggaggaaaaaggaaaaagtgaaaaggctaaagagagaagtcctaaagag
agaagtcctaagggtcaaaaggttaaagagacaagtcctaagggtcaaaaggttaaagag
acaagtcctaagggtcaaaaggttaaagagagaagtcctaaagagagaagtcaaaaggtt
aaagagacaagtcctaagggtcaaaaggttaaagagagaagtcctaaagagagaagttcg
aagggtcaaaaggttaaagagagaagtcctaagggtcacaagtcggtaaaggatgagaaa
gacatgaaagaagagaaagtgtcagaaagcccccaagccaaaaaagcccccaccatcagc
agtttctttgctcccaggaaggctgctgtaaagatggagaaaccagagaagagcgagcga
gacggaaaggagaagagcgagggaaaggagaagagcaagggaaaggagaagagggaagag
cgaggagtatagaagactgcccaggcccagtatgacccgtccagacccaactaccaccct
gtagaccacgcctgctggagccggggtcagagggtcccgtatttggctgttgcacgcacc
tttgaaaagattgaggaagattctggcagattgaggaacattgaaacattatcaaatctc
ctacgctctgttatcatcctctctccagaggacctgctgtgctgcgtctacctgtgtctc
aatcagctgggtcctgcttacatggggctggagctgggagtgggagaaactgttctgatg
aaggctgttgcccaagctactgggcgacagttggacaaaatcaaggcggaggctgcagag
aagggggacttggggttggtggctgagagttcccgtaacaaccagagaattatgttccag
ccagccaatctgattgcagggggtgtgttcagcaaactgaaagacatcgggaacatgagt
gggaattctgccatgaataagaagattgacatcatcaaaggtctctttgtagcctgtcgt
ttctctgaagccagatacattgtcaggtcgctggcagggaagctgaggattggcttggct
gaacagagtgtactgtctgccctgagtcaggccgtgtgtctgtctcctccaggacaagac
ttccctccggcggtgattgacgcagggaaaggaatgagtgcagaaaaacagaaagcttgg
atagaagagaagagccttctcctcaaacagacttactgtgagatgccgaactatgatgtc
atcatcccagtcattctgaaggaggggattgatgaactccccaaccactgcaaactcact
ccaggtgtaccgttgaggcccatgctggctcaccccaccaaaggtgtaggagaggtgatg
aagagatttgatgaagccgccttcacctgcgagtacaagtatgatggagaacgagcacag
atccatatcttggagaacggggaagtgcgtattttcagtcgcaaccaggaggataatacc
accaaatatcctgacatcatctctcgcattcatacggtaaagaatgagtctgtcatatcc
tgtgtgttggacactgaggcagtagcttgggacagagagaagaaacagatccaaccattc
caggttctcatcacacggaagagaaaggacgtggctgctgctgatatcaaggtccaagtg
tgtgtgtacgccttcgacctgctgtatctcaatggagagtctctagtgaagcagcccttg
tcatgtcgcagggctctgttgaagaagagcttccaggagaaggagggagagtttgtgttc
gcccgcgccatcgactcagacaacacagacgccatagctgagttcctggagcaatccgtt
cgagactcctgtgagggactcatggtgaagactctggagaaagatgccacgtatgaaatc
gccaagcgctctcacaactggctcaagctgaagaaggattatctggatggcgtgggggac
acgatggatctgtgtgtgatcggagcgtatctggggaagggcaagagagcagggacctac
ggaggctttctgctcgcctgctacgatgaggacaatgaagagttccagtccgtctgcaag
attgggacaggtttcaaggatgaagatttggagcaacattacaaattcctaaaggagcat
attttgccaaagccccgcccctattaccgtgtggaccaatcaactgagcccgacttgtgg
ctcgatgccgtgcaagtgtgggaagtgaagtgcgccgacctatcgctgtcgccgatctac
aaggctggcatgggattgtgtgacccagagaagggcatctctcttcggttcccacgcttc
ctgaggatcagagatgataagaagccggaggaggccacttcaggaggacagattgcggat
ttatacaggaagcagcaggttgttcagaatcagggtgacaaagctgacctcgaggactac
tactga
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