Oncorhynchus mykiss (rainbow trout): 110531058
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Entry
110531058 CDS
T07259
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110531058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110531058
03036 Chromosome and associated proteins [BR:
omy03036
]
110531058
Enzymes [BR:
omy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110531058
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110531058
mRNA degradation factors
5'-3' decay
Decapping complex
110531058
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110531058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
110531058
NCBI-ProteinID:
XP_036826868
UniProt:
A0A8C7WGJ0
LinkDB
All DBs
Position
32:complement(40678082..40723700)
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AA seq
490 aa
AA seq
DB search
MASARTENLGPIGMGLNKQNGQLRGVPKPASPQSGPLVLGSLLSKAVGAPQKAGASLEET
GIRFGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISFLGKGRQILLYSATFPISVQKFMAKHLHKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKSLYVAEFHATNPNCEEGL
KVTGRQQVEP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgcaagaacggagaaccttggccctatcggcatgggactgaacaagcagaac
gggcagcttaggggagtgcctaaaccggcctctcctcaatcaggaccccttgtcctgggc
tctctgttaagcaaggctgtaggtgcaccccagaaagcaggcgcttccctggaggaaact
ggcattagatttggagatgactggaaaaagagcctacagctccctcccaaagacactaga
gtcagaacctctgatgtaacatccactaagggaaatgagtttgaggactactgtctgaaa
cgggagctcctgatgggcatttttgagatgggctgggagaagccctcccctatccaggag
gagagcattcccatagccttgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatccccatgctggagagaatagacctgaagaaggattat
atacaggctattgtgatggtgcccactcgtgagctggccctgcaggtgagccagatcagt
atccagatcagcaagcacctgggcggagtgaaagtcatggccaccacgggtggtaccaac
ctgcgagatgacatcatgcgcctggacgagaccgtgcatgtggtcatagccacacctggc
aggatcttggacttgataaagaagggcgtggccaaagtggatagagttcagatgatggtg
atggatgaggcggacaagctgctgtctcaggactttgtggtgctcatcgaggatatcatc
agcttcctgggcaagggccgtcagatcctgctgtactctgccaccttccccatcagcgtg
cagaagttcatggccaagcacctgcataagccatatgagatcaacctgatggaggagctg
actctgaagggcatcacccagtactacgcctacgtcactgagagacaaaaggtccactgt
ctcaacacactcttctccaggttgcagatcaatcagtccatcatcttctgtaactccacc
cagagagttgagctgctggctaagaagatcacccagctgggctactcctgcttctatatc
cacgccaagatgatgcaggagtacagaaatcgtgtgttccacgacttcagaaatggactc
tgcagaaatcttgtctgcactgatctcttcaccagaggtattgacatccaggccgtcaat
gtcgtcatcaacttcgacttccccaagaatgctgagacatacctgcatcgcatcggacga
tcagggaggtttggccacctgggcctggccatcaacctgatcacctctgaagaccgcttc
aatctgaagtccatcgaggaccagttggtcaccgacatcaagcctatccctggcagcatc
gacaagagcctgtacgtggcagaattccacgccaccaaccccaattgcgaggaggggctg
aaggtgactggccgccaacaggtggagccctag
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